hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mef/mef00473/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0480  ( 1937 res)   mef00473

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
CAP_GLY  CAP-Gly domain                                 119.6    5.9e-32   1
DUF755   Domain of unknown function (DUF755)            -44.7       0.76   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
DUF755     1/1     774   881 ..     1   114 []   -44.7     0.76
CAP_GLY    1/1    1328  1393 ..     1    74 []   119.6  5.9e-32

Alignments of top-scoring domains:
DUF755: domain 1 of 1, from 774 to 881: score -44.7, E = 0.76
                   *->qNkkn.sPsPvTSsKql....RsRvQqqtnntssTtLTkedesLQkk
                       N+ + +P  + S  +l  ++  RvQ q+  +   tLT e+ ++Q  
   mKIAA0480   774    RNSEScIPEDLGSPSDLcvpsEARVQAQPGSPEHSTLTEEMVFSQ-- 818  

                   LqKELkKTlkLkh....LfsqLqsqSQQnssskhssKkkkHrR...hRaR
                      EL  T+  kh++++ ++ +        s + ssK+++++ ++ h + 
   mKIAA0480   819 ---ELESTSPSKHsppkSCLSM--------SKQESSKASHRTEghcHLPV 857  

                   KKkkhhkkkrstSSSsSSdnesSSSsESs<-*
                   K    h    ++S S++S   + S++ S    
   mKIAA0480   858 KS---HQ--PCYSWSDESLSMTQSETTSD    881  

CAP_GLY: domain 1 of 1, from 1328 to 1393: score 119.6, E = 5.9e-32
                   *->iGsRVevggggeedrrGtVRYvGetdfapGtniWvGVELDePlrGKN
                      iG+RV++g+      +Gt+R+ Getdfa+G   W+GVELD+P+ G+N
   mKIAA0480  1328    IGDRVLIGS----VQPGTLRFKGETDFAKGF--WAGVELDKPE-GNN 1367 

                   DGsvkGvrYFqCegpkyGiFvrpskve<-*
                   +G+++G+ YF C+ +k+GiF++p+k++   
   mKIAA0480  1368 NGTYDGIVYFVCK-DKHGIFAPPQKIS    1393 

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