hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg15928/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0479  ( 287 res)   mbg15928

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N 
--------     -----------                                -----    ------- ---
CTP_transf_2 Cytidylyltransferase                        76.9    4.3e-19   1

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
CTP_transf_2   1/1      43   281 ..     1   185 []    76.9  4.3e-19

Alignments of top-scoring domains:
CTP_transf_2: domain 1 of 1, from 43 to 281: score 76.9, E = 4.3e-19
                   *->lfgGtFDPiHlGHlrlleqAaelfdldeLvvgvpsdepphkd.kkkk
                      l++G+F+Pi++GH+ ++e+A++++ ++ +++++ +  +p++d+++k+
   mKIAA0479    43    LACGSFNPITKGHIQMFERARDYLHKTGRFIVIGGIVSPVHDsYGKQ 89   

                   kpifsaeeRlemlelaikvdpnlevddfEikr.gisYTidTLkhlrelnp
                    +++s+ +Rl m++la++++++++vd++E+ +++++ T  +L+h+r l +
   mKIAA0479    90 -GLVSSRHRLIMCQLAVQNSDWIRVDPWECYQdTWQTTCSVLEHHRDLMK 138  

                   ..................................................
                   + ++   ++ ++++ ++  ++++++++++  ++++ +++++  +  ++ +
   mKIAA0479   139 rvtgcilsnvntpsmtpvigqpqhentqpiyqnsnvptkptaakilgkvg 188  

                   ..................................dldlyfiigadalvsl
                   ++ ++    +++ ++ +  +++ + ++  + ++ +l++ +++g d+l+s+
   mKIAA0479   189 eslsriccvrppverftfvdenanlgtvmryeeiELRILLLCGSDLLESF 238  

                   r.....gwrgiqelleevqivvvnrpldygletvfkpkewlsrvylreel
                     ++  +  +++ ++  + ivvv r+ ++                     
   mKIAA0479   239 CipglwNEADMEVIVGDFGIVVVPRDAAD--------------------- 267  

                   dkyplgkivipdlpyndtegiSSTeIRer<-*
                             +d+ +n      S+++R+    
   mKIAA0479   268 ----------TDRIMNH-----SSILRKY    281  

//