hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mib/mib07095/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0478 ( 1234 res) mib07095 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- ZnF_C2H2 zinc finger 194.2 1.3e-53 13 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- ZnF_C2H2 1/13 730 750 .. 1 23 [] 5.7 72 ZnF_C2H2 2/13 801 824 .. 1 23 [] 20.3 0.26 ZnF_C2H2 3/13 830 852 .. 1 23 [] 23.7 0.025 ZnF_C2H2 4/13 858 881 .. 1 23 [] 20.3 0.26 ZnF_C2H2 5/13 887 909 .. 1 23 [] 26.9 0.0027 ZnF_C2H2 6/13 915 938 .. 1 23 [] 20.7 0.2 ZnF_C2H2 7/13 945 968 .. 1 23 [] 17.8 1.6 ZnF_C2H2 8/13 973 995 .. 1 23 [] 26.6 0.0033 ZnF_C2H2 9/13 1001 1023 .. 1 23 [] 19.1 0.64 ZnF_C2H2 10/13 1041 1064 .. 1 23 [] 21.2 0.15 ZnF_C2H2 11/13 1070 1093 .. 1 23 [] 21.3 0.14 ZnF_C2H2 12/13 1099 1122 .. 1 23 [] 19.9 0.35 ZnF_C2H2 13/13 1130 1153 .. 1 23 [] 23.3 0.034 Alignments of top-scoring domains: ZnF_C2H2: domain 1 of 13, from 730 to 750: score 5.7, E = 72 *->ykCpigCgksfssk.aLkrHmrvH<-* ++C+ C+ksf+ + Lk Hm+ mKIAA0478 730 FVCKA-CDKSFHFYcRLKVHMK-- 750 ZnF_C2H2: domain 2 of 13, from 801 to 824: score 20.3, E = 0.26 *->ykCpigCgksfssk.aLkrHmr.vH<-* +C++ Cg+ f +++ ++ H + H mKIAA0478 801 VTCDL-CGREFAHAsGMQYHKLtEH 824 ZnF_C2H2: domain 3 of 13, from 830 to 852: score 23.7, E = 0.025 *->ykCpigCgksfssk.aLkrHmrvH<-* + C++ Cg +f + Lk+H+r H mKIAA0478 830 FSCEE-CGAKFAANsTLKNHLRLH 852 ZnF_C2H2: domain 4 of 13, from 858 to 881: score 20.3, E = 0.26 *->ykCpigCgksfssk.aLkrHmr.vH<-* + C++ C ++f++++aL H +++H mKIAA0478 858 FMCKH-CLMTFTQAsALAYHTKkKH 881 ZnF_C2H2: domain 5 of 13, from 887 to 909: score 26.9, E = 0.0027 *->ykCpigCgksfssk.aLkrHmrvH<-* y C++ C+ +f + +L rH+r+H mKIAA0478 887 YACQY-CDAVFAQSiELSRHVRTH 909 ZnF_C2H2: domain 6 of 13, from 915 to 938: score 20.7, E = 0.2 *->ykCpigCgksfssk.aLkrHmr.vH<-* y+C Cgk f++++ L H+ + H mKIAA0478 915 YVCRD-CGKGFRQAnGLSIHLHtFH 938 ZnF_C2H2: domain 7 of 13, from 945 to 968: score 17.8, E = 1.6 *->ykCpigCgksfssk.aLkrHmr.vH<-* y C++ C +sfs+ ++ ++H+ +vH mKIAA0478 945 YDCKK-CRMSFSTLqDHRKHIHeVH 968 ZnF_C2H2: domain 8 of 13, from 973 to 995: score 26.6, E = 0.0033 *->ykCpigCgksfssk.aLkrHmrvH<-* + Cp Cgk fs ++ L+rHm +H mKIAA0478 973 HPCPT-CGKIFSAPsMLERHMVTH 995 ZnF_C2H2: domain 9 of 13, from 1001 to 1023: score 19.1, E = 0.64 *->ykCpigCgksfssk.aLkrHmrvH<-* + C i C+k + + + L H r+H mKIAA0478 1001 FSCGI-CNKAYQQLsGLWYHNRTH 1023 ZnF_C2H2: domain 10 of 13, from 1041 to 1064: score 21.2, E = 0.15 *->ykCpigCgksfssk.aLkrHmr.vH<-* ++C+ C+k+fs+ + k+H+++ H mKIAA0478 1041 LQCSS-CDKTFSNTvEHKKHIKtEH 1064 [output cut off at A = 10 top alignments] //