hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mib/mib07095/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0478 ( 1234 res) mib07095 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- zf-C2H2 Zinc finger, C2H2 type 220.9 1.8e-62 13 zf-BED BED zinc finger 8.8 0.36 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- zf-C2H2 1/13 730 752 .. 1 24 [] 13.6 4.8 zf-C2H2 2/13 801 824 .. 1 24 [] 19.7 0.068 zf-C2H2 3/13 830 852 .. 1 24 [] 29.1 0.0001 zf-BED 1/1 819 853 .. 1 52 [] 8.8 0.36 zf-C2H2 4/13 858 881 .. 1 24 [] 23.3 0.0059 zf-C2H2 5/13 887 909 .. 1 24 [] 29.3 8.8e-05 zf-C2H2 6/13 915 938 .. 1 24 [] 27.6 0.00029 zf-C2H2 7/13 945 968 .. 1 24 [] 13.4 5 zf-C2H2 8/13 973 995 .. 1 24 [] 31.1 2.6e-05 zf-C2H2 9/13 1001 1023 .. 1 24 [] 22.7 0.0085 zf-C2H2 10/13 1041 1064 .. 1 24 [] 20.6 0.037 zf-C2H2 11/13 1070 1093 .. 1 24 [] 15.5 1.3 zf-C2H2 12/13 1099 1122 .. 1 24 [] 21.1 0.027 zf-C2H2 13/13 1130 1153 .. 1 24 [] 24.6 0.0024 Alignments of top-scoring domains: zf-C2H2: domain 1 of 13, from 730 to 752: score 13.6, E = 4.8 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ C+ksF Lk H++++ mKIAA0478 730 FVCK-ACDKSFHFYCRLKVHMKRC 752 zf-C2H2: domain 2 of 13, from 801 to 824: score 19.7, E = 0.068 *->ykCpfdCgksFsrksnLkrHlrt.H<-* +C+ Cg+ F + s ++ H+ t+H mKIAA0478 801 VTCD-LCGREFAHASGMQYHKLTeH 824 zf-C2H2: domain 3 of 13, from 830 to 852: score 29.1, E = 0.0001 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +Cg +F +s+Lk+Hlr H mKIAA0478 830 FSCE-ECGAKFAANSTLKNHLRLH 852 zf-BED: domain 1 of 1, from 819 to 853: score 8.8, E = 0.36 *->SkvWkhFtkveeeedgkevegkakCkhCgkklsrkkksGTsnLirHL +k+ +hF+++ + + C Cg+k++ + s+L++HL mKIAA0478 819 HKLTEHFDEK---PFS--------CEECGAKFAAN-----STLKNHL 849 rrkHp<-* r H mKIAA0478 850 R-LHT 853 zf-C2H2: domain 4 of 13, from 858 to 881: score 23.3, E = 0.0059 *->ykCpfdCgksFsrksnLkrHlrt.H<-* ++C+ +C +F++ s L H +++H mKIAA0478 858 FMCK-HCLMTFTQASALAYHTKKkH 881 zf-C2H2: domain 5 of 13, from 887 to 909: score 29.3, E = 8.8e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +C+ +F ++ +L rH rtH mKIAA0478 887 YACQ-YCDAVFAQSIELSRHVRTH 909 zf-C2H2: domain 6 of 13, from 915 to 938: score 27.6, E = 0.00029 *->ykCpfdCgksFsrksnLkrHlrt.H<-* y+C dCgk F++ L Hl t H mKIAA0478 915 YVCR-DCGKGFRQANGLSIHLHTfH 938 zf-C2H2: domain 7 of 13, from 945 to 968: score 13.4, E = 5 *->ykCpfdCgksFsrksnLkrHlrt.H<-* y C+ +C sFs+ + ++H+ H mKIAA0478 945 YDCK-KCRMSFSTLQDHRKHIHEvH 968 zf-C2H2: domain 8 of 13, from 973 to 995: score 31.1, E = 2.6e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* + Cp Cgk Fs +s L+rH+ tH mKIAA0478 973 HPCP-TCGKIFSAPSMLERHMVTH 995 zf-C2H2: domain 9 of 13, from 1001 to 1023: score 22.7, E = 0.0085 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C +C+k++ + s L H rtH mKIAA0478 1001 FSCG-ICNKAYQQLSGLWYHNRTH 1023 zf-C2H2: domain 10 of 13, from 1041 to 1064: score 20.6, E = 0.037 *->ykCpfdCgksFsrksnLkrHlrt.H<-* +C+ C+k+Fs+ + k+H++t+H mKIAA0478 1041 LQCS-SCDKTFSNTVEHKKHIKTeH 1064 zf-C2H2: domain 11 of 13, from 1070 to 1093: score 15.5, E = 1.3 *->ykCpfdCgksFsrksnLkrHlrt.H<-* ++C+ +C++ F +++ L+ H + +H mKIAA0478 1070 HECD-QCKELFPTPALLQVHVKCqH 1093 zf-C2H2: domain 12 of 13, from 1099 to 1122: score 21.1, E = 0.027 *->ykCpfdCgksFsrksnLkrHlrt.H<-* ++C +C +F+ ++ L++H t+H mKIAA0478 1099 FRCL-YCAATFRFPGALQHHVTTeH 1122 zf-C2H2: domain 13 of 13, from 1130 to 1153: score 24.6, E = 0.0024 *->ykCpfdCgksFsrksnLkrHlrt.H<-* + C+ Cg+ F+++++L +Hl ++H mKIAA0478 1130 FPCE-LCGELFTSQAQLDSHLESeH 1153 //