hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mph/mph00319/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0475  ( 268 res)   mph00319

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
DUF1193  Protein of unknown function (DUF1193)          574.7     6e-169   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
DUF1193    1/1      34   261 ..     1   243 []   574.7   6e-169

Alignments of top-scoring domains:
DUF1193: domain 1 of 1, from 34 to 261: score 574.7, E = 6e-169
                   *->EIyevakekkLqkTFFvsPDEDGanNlCFfGKCsYYCdTehAvCGdP
                      E ++va+e++L++  F+++    +nN+CF+GKC YYC++++++C+d+
   mKIAA0475    34    EVKPVATEQLLST--FLTV----GNNTCFYGKC-YYCRETEPACADG 73   

                   RDmlEGSlaaFLPdlslapRkkwRsPWrRtYhkrKkVAeWEvDmnYCTdk
                    Dm+EGS++++LPd  ++p++k+R+PW+RtY+++K+ A+WE+D++YC d+
   mKIAA0475    74 -DMMEGSVTLWLPD--VWPLQKHRHPWGRTYREGKL-ARWEYDESYC-DA 118  

                   VKqkpPYdsGrRLLDliDmaiFDYLIGNmDRHHYEtFekFgdLesflIHL
                   VK+++PYdsG+RLLD+iD+a+FDYLIGN+DRHHYE+F+++++ +s+lI+L
   mKIAA0475   119 VKKTSPYDSGPRLLDIIDTAVFDYLIGNADRHHYESFQDDEG-ASMLILL 167  

                   DNGRgFGrpshDElSILAPLyQCClIRkSTwlrLqllangpkvLsealke
                   DN+++FG+ps+DE+SILAPLyQCC+IR+STw+rL++l+ng  vL++alk+
   mKIAA0475   168 DNAKSFGNPSLDERSILAPLYQCCIIRVSTWNRLNYLKNG--VLKSALKS 215  

                   SLsqDpvsPVLtdpHleAlDRRLlivLatVedCidkeGvasVlveD<-*
                   ++++Dp+sPVL+dpHl+ +D+RLl vLat+++C+d++G ++VlveD   
   mKIAA0475   216 AMAHDPISPVLSDPHLDTVDQRLLNVLATIKQCTDQFGTDTVLVED    261  

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