hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mbe/mbe00481/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0474 ( 726 res) mbe00481 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- GoLoco LGN motif, putative GEFs specific for G-alph 48.6 7.9e-10 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- GoLoco 1/1 58 80 .. 1 23 [] 48.6 7.9e-10 Alignments of top-scoring domains: GoLoco: domain 1 of 1, from 58 to 80: score 48.6, E = 7.9e-10 *->dEdlfdlllrmQssRmDDQRcel<-* + dlf+++++mQ+sRmD+QRc++ mKIAA0474 58 NTDLFEMIEKMQGSRMDEQRCSF 80 //