hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbe/mbe00481/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0474 ( 726 res) mbe00481 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Rap_GAP Rap/ran-GAP 426.2 3e-124 1 GoLoco GoLoco motif 35.7 1.1e-06 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- GoLoco 1/1 58 80 .. 1 23 [] 35.7 1.1e-06 Rap_GAP 1/1 273 460 .. 1 192 [] 426.2 3e-124 Alignments of top-scoring domains: GoLoco: domain 1 of 1, from 58 to 80: score 35.7, E = 1.1e-06 *->dEelfdLLlrvQssRmDDQRael<-* +lf+++ ++Q+sRmD+QR+ + mKIAA0474 58 NTDLFEMIEKMQGSRMDEQRCSF 80 Rap_GAP: domain 1 of 1, from 273 to 460: score 426.2, E = 3e-124 *->lysNeeaspaFdeFLtlLGqrvrLKdfepDkvYrGGLDvkgddTGth l+s++e+spaF+eFL++LGq+v+L+df++ +rGGLDv++++TGt+ mKIAA0474 273 LFSTNEESPAFVEFLEFLGQKVKLQDFKG---FRGGLDVTHGQTGTE 316 svYttykdmeimFHVSTlLPytesdkqqLqrKRHIGNDiVtIVFqesGek svY++++++eimFHVST+LPyte+d+qqLqrKRHIGNDiV++VFq++++ mKIAA0474 317 SVYCNFRNKEIMFHVSTKLPYTEGDAQQLQRKRHIGNDIVAVVFQDENT- 365 pFspdtIrShFqhVfviVraldpetehvtYkVsvtrrkDvpafgptlpkg pF+pd+I+S+F+h++v+V+a+++++++++YkVsvt+r+Dvp+fgp+lp++ mKIAA0474 366 PFVPDMIASNFLHAYVVVQAEGGGPDGPLYKVSVTARDDVPFFGPPLPDP 415 avfdknaeFreflLakliNaenavhkarkFaklatrtRqklLadL<-* avf+k++eF+eflL+kliNae+a++ka+kFakl++rtR++lL++L mKIAA0474 416 AVFRKGPEFQEFLLTKLINAEYACYKAEKFAKLEERTRAALLETL 460 //