hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg05612/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0473  ( 938 res)   mbg05612

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
DnaJ     DnaJ molecular chaperone homology domain        29.9    0.00036   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
DnaJ       1/1     873   934 ..     1    72 []    29.9  0.00036

Alignments of top-scoring domains:
DnaJ: domain 1 of 1, from 873 to 934: score 29.9, E = 0.00036
                   *->tdyYeiLGvskdAsddeIKKAYRkLAlkyHPDKnpgdpelseeklpe
                      ++ ++  G     +++++KK YR+ +l +HPDK +g p         
   mKIAA0473   873    ETKWKPVGMADLVTPEQVKKVYRRAVLVVHPDKATGQPY-------- 911  

                   eekeeAeekFkeIneAYevLsDpek<-*
                     ++ A+  F+e+n A++   ++ +   
   mKIAA0473   912 --EQYAKMIFMELNDAWSEFENQGQ    934  

//