hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg05612/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0473  ( 938 res)   mbg05612

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
DnaJ     DnaJ domain                                     -0.5      0.029   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
DnaJ       1/1     880   938 .]     1    79 []    -0.5    0.029

Alignments of top-scoring domains:
DnaJ: domain 1 of 1, from 880 to 938: score -0.5, E = 0.029
                   *->dyYeiLGvprdAsdeeIKKAYRkLAlkyHPDKNpgdpeerktlerae
                            G     ++e++KK YR+ +l +HPDK  g p      e   
   mKIAA0473   880    ------GMADLVTPEQVKKVYRRAVLVVHPDKATGQP-----YEQY- 914  

                   skeeAeekFkeineAYevLsDpekRaiYDqyg<-*
                       A   F+e+n A++   +  ++ +Y       
   mKIAA0473   915 ----AKMIFMELNDAWSEFENQGQKPLY----    938  

//