hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mpg/mpg00435/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0469 ( 604 res) mpg00435 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- BTB Broad-Complex, Tramtrack and Bric a brac 106.0 4.4e-27 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- BTB 1/1 42 140 .. 1 114 [] 106.0 4.4e-27 Alignments of top-scoring domains: BTB: domain 1 of 1, from 42 to 140: score 106.0, E = 4.4e-27 *->cDvtlvvggdlggdnaegkkfhasqHkavLaacrrdSpyFkalfes. Dvtl + g g+ f+a H+avLaa SpyF+a+f ++ mKIAA0469 42 LDVTLEAAG--------GRDFPA--HRAVLAAA---SPYFRAMFAGq 75 ........ieldDeallievspeaFralLnflYt.kldlpeedvenveel ++++ +++ l + v p+ +++lL+f Yt+++ ++ + n+e l mKIAA0469 76 lresraerVRLHG------VPPDMLQLLLDFSYTgRVAVSGD---NAEPL 116 LelAdfldSYGqip.lvelCeefllknl<-* L++Ad+l q p ++e+C fl+++l mKIAA0469 117 LRAADLL----QFPaVKEACGAFLQQQL 140 //