hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mpg/mpg00435/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0469 ( 604 res) mpg00435 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Kelch_1 Kelch motif 174.4 1.9e-48 6 BTB BTB/POZ domain 144.0 2.6e-39 1 BACK BTB And C-terminal Kelch 132.8 6.2e-36 1 Kelch_2 Kelch motif 86.0 7.7e-22 6 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- BTB 1/1 32 140 .. 1 135 [] 144.0 2.6e-39 BACK 1/1 145 246 .. 1 103 [] 132.8 6.2e-36 Kelch_1 1/6 282 328 .. 1 45 [] 28.7 0.00014 Kelch_2 1/6 282 328 .. 1 54 [] 12.2 6.3 Kelch_1 2/6 331 376 .. 1 45 [] 47.9 2.3e-10 Kelch_2 2/6 333 376 .. 1 54 [] 14.1 3.3 Kelch_1 3/6 378 416 .. 1 45 [] 30.5 4e-05 Kelch_2 3/6 378 416 .. 1 54 [] 10.7 9.7 Kelch_1 4/6 418 462 .. 1 45 [] 18.2 0.19 Kelch_2 4/6 418 462 .. 1 54 [] 14.6 2.3 Kelch_1 5/6 466 506 .. 1 45 [] 11.4 1.4 Kelch_2 5/6 466 506 .. 1 54 [] 3.8 80 Kelch_1 6/6 508 554 .. 1 45 [] 46.8 4.8e-10 Kelch_2 6/6 508 554 .. 1 54 [] 36.8 4.9e-07 Alignments of top-scoring domains: BTB: domain 1 of 1, from 32 to 140: score 144.0, E = 2.6e-39 *->lnelreqgelcDVtLvvgdgsgrydvgkkfkAHKavLaacSpYFkal l +lr + ++ DVtL + + g+ f+AH+avLaa+SpYF+a+ mKIAA0469 32 LSQLRAERKFLDVTLEAAG-------GRDFPAHRAVLAAASPYFRAM 71 FtgqfkesiteeessvsseieledvspedfealLefiYtgelsitqdqks F gq++ e+ + ++ l +v+p+ +++lL+f Ytg++ ++ mKIAA0469 72 FAGQLR----ESRAE---RVRLHGVPPDMLQLLLDFSYTGRVAVS----- 109 PssckseenvedlLalAadllqipslvdkCeefliksl<-* +n+e lL++A dllq p+++++C fl+++l mKIAA0469 110 ------GDNAEPLLRAA-DLLQFPAVKEACGAFLQQQL 140 BACK: domain 1 of 1, from 145 to 246: score 132.8, E = 6.2e-36 *->CLgIrrfAdaygceeLaeaAdrfilqnFleVakseEFlqLskeqLie CL++++fA+a++c+ La aA+rfil++ e+ e +L++ +L+ mKIAA0469 145 CLDMQDFAEAFSCSGLASAAQRFILRHVGELG-AEQLERLPLARLLR 190 lLssDeLnVpsEeeVfeAvmrWvkhdvenRkkhlpeLLshVRLpLLspky +L++D L+Vp+Ee +++ ++rWv+ d+++R +h+p+LL++VRLp++ + y mKIAA0469 191 YLRDDGLCVPKEEAAYQLALRWVRADPPRRAPHWPQLLEAVRLPFVRRFY 240 Llevve<-* Ll +ve mKIAA0469 241 LLAHVE 246 Kelch_1: domain 1 of 6, from 282 to 328: score 28.7, E = 0.00014 *->pRsgagvvvldgkiYviGGydg..qslnsvevYDpetntWtklpsmp + + ++ l + +GG+d + l +v++Y+p t++W++l++ p mKIAA0469 282 RMRPRPSTGLAEILVLVGGCDQdcDELVTVDCYNPQTGQWRYLAEFP 328 <-* mKIAA0469 - - Kelch_2: domain 1 of 6, from 282 to 328: score 12.2, E = 6.3 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW ++ p s+ + + l++vGG+ ++++de+ + +++p+t +W mKIAA0469 282 RMRPRPSTGLAEILVLVGGC------DQDCDELVTVD-CYNPQTGQW 321 eklpalp<-* ++l+ p mKIAA0469 322 RYLAEFP 328 Kelch_1: domain 2 of 6, from 331 to 376: score 47.9, E = 2.3e-10 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWtklpsmp< g+++v+l++ iYv+GG+dg++ ++v++Y+ + n+Wt++++m mKIAA0469 331 LGGGYSIVALGNDIYVTGGSDGsRLYDCVWRYNSSVNEWTEVAPML 376 -* mKIAA0469 - - Kelch_2: domain 2 of 6, from 333 to 376: score 14.1, E = 3.3 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW ++ ++v +g+ +yv GGs +g+ + + +++++ + n+W mKIAA0469 333 --GGYSIVALGNDIYVTGGS--------DGSRLYDCVWRYNSSVNEW 369 eklpalp<-* ++++++ mKIAA0469 370 TEVAPML 376 Kelch_1: domain 3 of 6, from 378 to 416: score 30.5, E = 4e-05 *->pRsgagvvvldgkiYviGGydgqslnsvevYDpetntWtklpsmp<- +R ++++ vldg++Yv+ +s e+YD+ t++W+ l +m+ mKIAA0469 378 AREYHSSSVLDGLLYVVAA------DSTERYDHATDSWEALQPMT 416 * mKIAA0469 - - Kelch_2: domain 3 of 6, from 378 to 416: score 10.7, E = 9.7 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW r h+s+v++g lyvv + ++d t +W mKIAA0469 378 AREYHSSSVLDGLLYVVAAD---------------STERYDHATDSW 409 eklpalp<-* e l+++ mKIAA0469 410 EALQPMT 416 Kelch_1: domain 4 of 6, from 418 to 462: score 18.2, E = 0.19 *->pRsgagvvvldgkiYviGGydgqslnsvevYDpetntWtklpsmp<- p +++ +++ g++Y+iG g+ + + +YDp+t+ W+ + + mKIAA0469 418 PMDNCSTTACRGRLYAIGSLAGKETMVIQCYDPDTDLWSLVNCGQ 462 * mKIAA0469 - - Kelch_2: domain 4 of 6, from 418 to 462: score 14.6, E = 2.3 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW p+ +++++ ++g+ly +G + +++++++dp+t W mKIAA0469 418 PMDNCSTTACRGRLYAIGSL---------AGKETMVIQCYDPDTDLW 455 eklpalp<-* + +++ mKIAA0469 456 SLVNCGQ 462 Kelch_1: domain 5 of 6, from 466 to 506: score 11.4, E = 1.4 *->pRsgagvvvldgkiYviGGydgqslnsvevYDpetntWtklpsmp<- v+l+g++Y + +d+ + v+vY+p++++W k+psm+ mKIAA0469 466 WSFAPKTVTLNGLMYFV--RDD--SAEVDVYNPTKDEWDKIPSMN 506 * mKIAA0469 - - Kelch_2: domain 5 of 6, from 466 to 506: score 3.8, E = 80 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW ++ +v+++g +y+v s + v++p + +W mKIAA0469 466 WSFAPKTVTLNGLMYFVRDD-------------SAEVDVYNPTKDEW 499 eklpalp<-* +k+p++ mKIAA0469 500 DKIPSMN 506 Kelch_1: domain 6 of 6, from 508 to 554: score 46.8, E = 4.8e-10 *->pRsgagvvvldgkiYviGGydg..qslnsvevYDpetntWtklpsmp +g + +vl+gk+Yv GGyd++ + ++ ve+YDpet W+ + +p mKIAA0469 508 VHVGGSLAVLGGKLYVSGGYDNtfELSDVVEAYDPETRAWSVVGRLP 554 <-* mKIAA0469 - - Kelch_2: domain 6 of 6, from 508 to 554: score 36.8, E = 4.9e-07 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW +++ +++v+ggklyv+GG+ +n e+s+++ +dpet++W mKIAA0469 508 VHVGGSLAVLGGKLYVSGGY-------DNTFELSDVVEAYDPETRAW 547 eklpalp<-* + + +lp mKIAA0469 548 SVVGRLP 554 //