hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm07213/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0468  ( 486 res)   mpm07213

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Syndecan Syndecan domain                                789.5   1.3e-233   1
Mucin    Mucin-like glycoprotein                        -16.6        0.9   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Mucin      1/1      72   275 ..     1   151 []   -16.6      0.9
Syndecan   1/1      70   484 ..     1   438 []   789.5 1.3e-233

Alignments of top-scoring domains:
Mucin: domain 1 of 1, from 72 to 275: score -16.6, E = 0.9
                   *->MmtlrRlLcAlLvLaLCCCasVCvtAqe...................
                            lL  lL+L L   a   + Aq  ++++ +++ + +++++++
   mKIAA0468    72    -L----LLPPLLLLLL---AGRAAGAQRwrnenferpvdlegsgddd 110  

                   ................eGqydaavveaaeGqsktttttttttpttttttt
                   + ++++ ++  ++++++   ++ + e+a    +      +t p   +tt 
   mKIAA0468   111 sfpddelddlysgsgsGYFEQESGLETAMRFIPDMALAAPTAPAMLPTTV 160  

                   tw....................................eketTtttaitt
                     + +++ ++  ++++++++ ++++  ++ ++  +++++k tT +t++ t
   mKIAA0468   161 IQpvdtpfeellsehpspepvtspplvtevtevveessQKATTISTTTST 210  

                   tttktttttttttt.tTttteAPsknittseAPtttdtraPSsirkiDGS
                   t+++tt ++t  t ++T++t APs    t eAP  t t a  +   i G 
   mKIAA0468   211 TAATTTGAPTMATApATAATTAPS----TPEAPPATATVADVRTTGIQGM 256  

                   LgssaWVcvPLLLlvsAlvyTAGaag<-*
                   L      + PL  ++ A + T  aa    
   mKIAA0468   257 L------PLPLTTAATAKITT-PAAP    275  

Syndecan: domain 1 of 1, from 70 to 484: score 789.5, E = 1.3e-233
                   *->rkllwlalllllLslqsalpQiwaanyRLnterPvDlegSGDDdsFd
                      r+ll+++lllllL++++a++Q+w+++   n+erPvDlegSGDDdsF+
   mKIAA0468    70    RGLLLPPLLLLLLAGRAAGAQRWRNE---NFERPVDLEGSGDDDSFP 113  

                   DdeLDDnySGSGssGyfEqeEtgsdqapsrlkDvelltptptapkPvTlv
                   DdeLDD+ySGSG sGyfEqe +g+++a+++++D++l++pt++a++P+T++
   mKIAA0468   114 DDELDDLYSGSG-SGYFEQE-SGLETAMRFIPDMALAAPTAPAMLPTTVI 161  

                   QPvdtPfEeflsedtrPeqaTsvpkvTkvsevneegSwkqttasTtssth
                   QPvdtPfEe+lse+++Pe++Ts+p+vT+v+ev+ee+S+k+tt+sTt+st+
   mKIAA0468   162 QPVDTPFEELLSEHPSPEPVTSPPLVTEVTEVVEESSQKATTISTTTSTT 211  

                   aattsvevhhsTlPagaatteatttehptihatvatvrtTsvqrllPpvV
                   aatt+++++++T+Pa+aatt+++t+e+p+++atva+vrtT++q++lP+++
   mKIAA0468   212 AATTTGAPTMATAPATAATTAPSTPEAPPATATVADVRTTGIQGMLPLPL 261  

                   tvsatpsaTakdtHHHHekeaTTvpttttqlptphqvststakPtslqkp
                   t++at+++T++++    ++++TTv+t++t++ptp++v+t+t++P++l++p
   mKIAA0468   262 TTAATAKITTPAA----PSPPTTVATLDTEAPTPRLVNTATSRPRALPRP 307  

                   itshHehedtepgthetstptapgqaevstvnhpgrletggdsttevpas
                   +t++ e++++e++t +++++tapg++e +++++p++l+t+ ++++evp+s
   mKIAA0468   308 VTTQ-EPDVAERST-LPLGTTAPGPTEMAQTPTPESLLTTIQDEPEVPVS 355  

                   dgLvDLtpSgdlEiqeeDviPqpEestepdltnEtsaentaaaapep...
                   +g     pSgd+E+q        Ee+t+pd++nE++a+++aaa+p+p+ +
   mKIAA0468   356 GG-----PSGDFELQ--------EETTQPDTANEVVAVEGAAAKPSPplg 392  

                   .lqrgqpPdiGLIDNtVdsGaSaAqlsqkniLeRKEVLaAVIaGGvVGli
                   +l++g++P+ GL+DN++dsG+SaAql+qk+iLeRKEVL+AVI+GGvVG++
   mKIAA0468   393 tLPKGARPGPGLHDNAIDSGSSAAQLPQKSILERKEVLVAVIVGGVVGAL 442  

                   FAvfLVgfllYRMKKKDEGSYsLEEPKQAngYgsYQKPtkqTeEF<-*
                   FA+fLV++l+YRMKKKDEGSY+LEEPKQA+  ++YQKP+kq eEF   
   mKIAA0468   443 FAAFLVTLLIYRMKKKDEGSYTLEEPKQAS--VTYQKPDKQ-EEF    484  

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