hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mpm/mpm03293/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0466 ( 1214 res) mpm03293 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- IG Immunoglobulin 223.4 2e-62 8 IGv Immunoglobulin V-Type 78.5 8.3e-19 4 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- IGv 1/4 57 142 .. 1 76 [] 12.9 0.15 IG 1/8 47 162 .. 1 58 [] 31.9 8.7e-05 IGv 2/4 182 268 .. 1 76 [] 35.9 5.6e-06 IG 2/8 172 295 .. 1 58 [] 40.5 2.3e-07 IG 3/8 307 425 .. 1 58 [] 17.4 2 IGv 3/4 447 533 .. 1 76 [] -0.1 3 IG 4/8 437 559 .. 1 58 [] 32.2 7e-05 IG 5/8 573 694 .. 1 58 [] 19.9 0.37 IGv 4/4 716 804 .. 1 76 [] 31.8 9.7e-05 IG 6/8 706 831 .. 1 58 [] 39.2 5.4e-07 IG 7/8 843 967 .. 1 58 [] 35.1 9.5e-06 IG 8/8 979 1129 .. 1 58 [] 25.4 0.0081 Alignments of top-scoring domains: IGv: domain 1 of 4, from 57 to 142: score 12.9, E = 0.15 *->svtLsCkaSgftf....yvsWvrqpPsstgkgkglewlgy....... +t+ C +Sg++ ++++++ W Ps + +++ + + +++ + mKIAA0466 57 HITIWCNVSGYQGpseqNFQWSIYLPSAP--EREVQIVSTvdssfpy 101 .sykgRvtiskdtltraskndvsLtisnLrpeDtgtYyCar<-* y Rv + k +r+ +n++ L+i++L++ D g Y C + mKIAA0466 102 aIYTQRVRGGKIYVERIQGNSALLHITDLQARDAGEYECHT 142 IG: domain 1 of 8, from 47 to 162: score 31.9, E = 8.7e-05 *->pp.vtvkeGesvtLtC.as........titWy............... ++++ e + +t+ C++s+ +++ +++W+ ++ + + + + mKIAA0466 47 EGpLYRTESSHITIWCnVSgyqgpseqNFQWSiylpsaperevqivs 93 ...............................LtI.nvtpeDsesgGtYtC + +++ + +++ ++++ + ++++ L+I+++++ D+ G+Y C mKIAA0466 94 tvdssfpyaiytqrvrggkiyveriqgnsalLHItDLQARDA---GEYEC 140 aat......sgsasseqgttLtVl<-* +++ + gs+s+ +L V mKIAA0466 141 HTPntderyFGSYSA--KMNLVVI 162 IGv: domain 2 of 4, from 182 to 268: score 35.9, E = 5.6e-06 *->svtLsCkaSgftf.....yvsWvrqpPsstgkgkglewlgy...... ++LsC++ + t ++++ vsW+rq+ g+ +++e++ +++ mKIAA0466 182 PLELSCEVATETVqhthlSVSWLRQK----GGENPVEVISLsrdfil 224 .........sykgRvtiskdtltraskndvsLtisnLrpeDtgtYyCar< +++++ ++++ g v + k +++++ Lti L+p+D+g +yC+ mKIAA0466 225 hssseyaqrQSLGEVRLDKL-----GRSTFRLTIFHLQPSDQGEFYCEA 268 -* mKIAA0466 - - IG: domain 2 of 8, from 172 to 295: score 40.5, E = 2.3e-07 *->pp.vtvkeGesvtLtC.as.........titWy.............. p+++ +e ++++L+C++++ + +++ +++W++++++ ++ + mKIAA0466 172 PQtLHKVEQDPLELSCeVAtetvqhthlSVSWLrqkggenpvevisl 218 ................................LtI.nvtpeDsesgGtYt +++ ++++ ++++ + + ++ ++++ +LtI +++p+D+ G+++ mKIAA0466 219 srdfilhssseyaqrqslgevrldklgrstfrLTIfHLQPSDQ---GEFY 265 Caat............sgsasseqgttLtVl<-* C+a +++++ + s +g+ + V+ mKIAA0466 266 CEAAewiqdpdgswyaMTRKRS-EGAVVNVQ 295 IG: domain 3 of 8, from 307 to 425: score 17.4, E = 2 *->pp.vtvkeGesvtLtC.as.........titWy.............. + + +Ge+v+++C + + ++ ++W +++ + +++ mKIAA0466 307 TDkRLHTVGEPVEFRCiLEaqnipdryfAVSWAfnssliatmgpnav 353 ...........................LtI.nvtpeDsesgGtYtCaat. + +++ ++ +++ + + +++ L I +++ eDs G Y C++t mKIAA0466 354 pvlnsdfahreakgqlkvakesdgvfvLKIyHLRQEDS---GKYNCRVTe 400 ...........sgsasseqgttLtVl<-* + ++ ++ ++ s+ +++ + Vl mKIAA0466 401 rektvtgefidKESKRP-KNIPIVVL 425 IGv: domain 3 of 4, from 447 to 533: score -0.1, E = 3 *->svtLsCkaSgftf.....yvsWvrqpPsstgkgkglewlgy...... +++ sC++ + + + v W+ ++ + + + +++++ mKIAA0466 447 DLHFSCTVRTVGRlqarfSVIWQLVDR-----QNRRSNVMWldrdgt 488 .....sykgRvtiskdtltraskndvsLtisnLrpeDtgtYyCar<-* ++++ y +R + + ++ n++sL i n r eD+g Y C + mKIAA0466 489 lqpgsAYWERSSYGGIQMEQVQPNSFSLGIFNSRKEDEGQYECHV 533 IG: domain 4 of 8, from 437 to 559: score 32.2, E = 7e-05 *->pp.vtvkeGesvtLtC.as.........titWy.............. + +v eGe++ ++C++ + + ++ W ++++++++ mKIAA0466 437 SNaSVVLEGEDLHFSCtVRtvgrlqarfSVIWQlvdrqnrrsnvmwl 483 ................................LtI.nvtpeDsesgGtYt +++++ ++++ +++ ++ + + ++++ +L I n ++eD+ G Y mKIAA0466 484 drdgtlqpgsaywerssyggiqmeqvqpnsfsLGIfNSRKEDE---GQYE 530 Caat............sgsasseqgttLtVl<-* C +t + ++ g+ + +t ++++ mKIAA0466 531 CHVTewvravdgewqiVGERRA--STLVSIT 559 IG: domain 5 of 8, from 573 to 694: score 19.9, E = 0.37 *->pp.vtvkeGesvtLtC.as.........titWy.............. p+vt + +s L+C ++++ + + ++tW+ ++ ++ ++ + mKIAA0466 573 TPgVTYS--DSFDLQCiIKphyparvpvSVTWRfqpvgtvefhdlvt 617 ................................LtI.nvtpeDsesgGtYt +++++ + ++++++ ++++ + ++++ +L I++++ + G Y+ mKIAA0466 618 ftrdggvqwgdksstfrtrtaiekaessnnvrLSIsRASDTEA---GKYQ 664 Caat............sgsasseqgttLtVl<-* C+a+ +++ +++ ++ + +s + +++Vl mKIAA0466 665 CVAElwrrnynntwtrLAERTS-NLLEIRVL 694 IGv: domain 4 of 4, from 716 to 804: score 31.8, E = 9.7e-05 *->svtLsCkaSgftf.....yvsWvrqpPsstgkgkglewlgy...... + L C+++ t+++++ v W+ ++Ps + ++++ +++++ mKIAA0466 716 AIQLNCSVKSQTSpnshfAVLWYVHKPS----DADGKLILKtthssa 758 ..........sykgRvtiskdtltraskndvsLtisnLrpeDtgtYyCar + ++ ++++++gR+++ + s++ +sLt ++ +++D+g YyC + mKIAA0466 759 feygtyaeeeGLRGRLQFERHV----SGGLFSLTVQRAEVSDSGSYYCHV 804 <-* mKIAA0466 - - IG: domain 6 of 8, from 706 to 831: score 39.2, E = 5.4e-07 *->pp.vtvkeGesvtLtC.as.........titWy.............. +++t +e ++L+C++++ ++++++ + Wy +++++ +++ + mKIAA0466 706 KRtLTLVENRAIQLNCsVKsqtspnshfAVLWYvhkpsdadgklilk 752 ..................................LtI.nvtpeDsesgGt +++++ ++ + +++ + ++ +++ +Lt+++++++Ds G mKIAA0466 753 tthssafeygtyaeeeglrgrlqferhvsgglfsLTVqRAEVSDS---GS 799 YtCaat.............sgsasseqgttLtVl<-* Y+C ++ +++ + + ++s+ t++tV+ mKIAA0466 800 YYCHVEewllspnyawyklAEEVSG--RTEVTVK 831 [output cut off at A = 10 top alignments] //