hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mpm/mpm03293/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0466 ( 1214 res) mpm03293 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- V-set Immunoglobulin V-set domain 143.5 3.9e-39 6 ig Immunoglobulin domain 135.0 1.4e-36 8 I-set Immunoglobulin I-set domain -22.0 0.73 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- ig 1/8 86 142 .. 1 65 [] 10.5 4.9 I-set 1/1 41 162 .. 1 97 [] -22.0 0.73 V-set 1/6 40 162 .. 1 130 [] 22.5 0.0034 ig 2/8 180 268 .. 1 65 [] 27.8 0.00025 V-set 2/6 165 297 .. 1 130 [] 43.8 3.8e-09 ig 3/8 315 398 .. 1 65 [] 12.4 3.1 V-set 3/6 300 408 .. 1 130 [] 1.8 0.4 ig 4/8 445 533 .. 1 65 [] 9.0 7 V-set 4/6 430 559 .. 1 130 [] 5.8 0.16 ig 5/8 579 667 .. 1 65 [] 17.1 0.43 ig 6/8 714 804 .. 1 65 [] 30.6 3.7e-05 V-set 5/6 699 831 .. 1 130 [] 57.5 2.8e-13 ig 7/8 851 940 .. 1 65 [] 21.8 0.016 V-set 6/6 836 967 .. 1 130 [] 26.4 0.00066 ig 8/8 987 1102 .. 1 65 [] 9.5 6.2 Alignments of top-scoring domains: ig: domain 1 of 8, from 86 to 142: score 10.5, E = 4.9 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq + v ++ +v +++p ++ + r+gk + ++ s mKIAA0466 86 EREVQIVSTVDSSFPYAIYTQRVRGGKiYVeRIQGNSAL-------- 124 tsLtitnvtpeDggtYtCvv<-* L+it+++ D+g+Y C+ mKIAA0466 125 --LHITDLQARDAGEYECHT 142 I-set: domain 1 of 1, from 41 to 162: score -22.0, E = 0.73 *->PkFtqkpkdveVqeGesarfeCkVtGtPePt...VsWfKd.....Gq + t + ++ +e + ++ C+V+G+ P++++ +W ++ + + mKIAA0466 41 RQVTVQEGPLYRTESSHITIWCNVSGYQGPSeqnFQWSIYlpsapER 87 plssv.............l.lpsdrfkvtydgGsgtytLtIsnvqpdDsG +++ v++ +++ + + + +++++ v ++ + L I + q +D+G mKIAA0466 88 EVQIVstvdssfpyaiytQrVRGGKIYVERIQ-GNSALLHITDLQARDAG 136 kYtCvAtN....saGeaeasaeLtVq<-* +Y C N++++ +G+ +a+ +L V mKIAA0466 137 EYECHTPNtderYFGSYSAKMNLVVI 162 V-set: domain 1 of 6, from 40 to 162: score 22.5, E = 0.0034 *->qstvtqepprLLLASLfWptsvtvaeGgsvtLpCtysGtfddsssss q +vt +++ ++ e +t+ C +s ++ +s mKIAA0466 40 QRQVTV-QEG----------PLYRTESSHITIWCNVS----GYQGPS 71 gtgsvyWyrqqppGekpeliiisyytyysysegngtvserfkgrvrfsgn +++W+ p + +++ + + + s+++ ++ r +g mKIAA0466 72 EQ-NFQWSI-YLPSAPEREV--QIVSTVDSSFPYAIYTQRVRGGKIYVER 117 pskgdfsLtIsnlqlsDsGtYyCa............gggtrLtVl<-* ++++++ L+I++lq+ D G Y C++++++++ ++ ++L+V mKIAA0466 118 IQGNSALLHITDLQARDAGEYECHtpntderyfgsySAKMNLVVI 162 ig: domain 2 of 8, from 180 to 268: score 27.8, E = 0.00025 *->GesvtLtCsvs..gfgppdvtvtWlrngk.lt.gvlvtssenngdst +++ L+C+v ++ + + +v+Wlr++++ + +++ s++ ++ mKIAA0466 180 QDPLELSCEVAteTVQHTHLSVSWLRQKGgENpVEVISLSRDFILHS 226 yqt....................sLtitnvtpeDggtYtCvv<-* ++ ++++ ++ + ++ ++++ +Lti ++p+D g+++C++ mKIAA0466 227 SSEyaqrqslgevrldklgrstfRLTIFHLQPSDQGEFYCEA 268 V-set: domain 2 of 6, from 165 to 297: score 43.8, E = 3.8e-09 *->qstvtqepprLLLASLfWptsvtvaeGgsvtLpCtysGtfddsssss +++ t+ p ++++e + ++L+C + +++++ mKIAA0466 165 SLQTTA-VPQ----------TLHKVEQDPLELSCEVA-----TETVQ 195 gtg.svyWyrqqppGekpeliiisyytyysysegngtvserfkgrvrfsg +t+ sv+W r q+ Ge p+++i + ++ + s+++ r ++ mKIAA0466 196 HTHlSVSWLR-QKGGENPVEVI------SLSRDFILHSSSEYAQRQSLGE 238 nps....kgdfsLtIsnlqlsDsGtYyCa..................... + ++ ++++f LtI +lq+sD G yC + +++++ ++++++ mKIAA0466 239 VRLdklgRSTFRLTIFHLQPSDQGEFYCEaaewiqdpdgswyamtrkrse 288 gggtrLtVl<-* g ++++ + mKIAA0466 289 GAVVNVQPT 297 ig: domain 3 of 8, from 315 to 398: score 12.4, E = 3.1 *->GesvtLtCsvs..gfgppdvtvtWlrngklt.gvlvtssenngdsty Ge+v ++C ++ + v+W +n+ l+ + ++ ++ + mKIAA0466 315 GEPVEFRCILEaqNIPDRYFAVSWAFNSSLIaTMGPNAVPVLNSDFA 361 qt................sLtitnvtpeDggtYtCvv<-* ++ +++ + +++++ +L i +++eD+g Y C+v mKIAA0466 362 HReakgqlkvakesdgvfVLKIYHLRQEDSGKYNCRV 398 V-set: domain 3 of 6, from 300 to 408: score 1.8, E = 0.4 *->qstvtqepprLLLASLfWptsvtvaeGgsvtLpCtysGtfddsssss ++tv e+++ +G+ v+++C + ++ mKIAA0466 300 EFTVRLETDK----------R-LHTVGEPVEFRCILE---AQN-IPD 331 gtgsvyWyrqqpp....Gekpeliiisyytyysysegngtvserfkgrvr + + v+W + ++ + +++ + + + ++ + ++++k + mKIAA0466 332 RYFAVSWAF-NSSliatMGPNAVPV------LNSDFAHREAKGQLKVAKE 374 fsgnpskgdfsLtIsnlqlsDsGtYyCa..gggtrLtVl<-* s+g f L+I +l+++DsG Y C ++ + ++t + mKIAA0466 375 -----SDGVFVLKIYHLRQEDSGKYNCRvtEREKTVTGE 408 ig: domain 4 of 8, from 445 to 533: score 9.0, E = 7 *->GesvtLtCsvs..gfgppdvtvtWlrngk.lt.gvlvtssenngdst Ge++ ++C+v++ g +v W+ + + ++++ +++++ + mKIAA0466 445 GEDLHFSCTVRtvGRLQARFSVIWQLVDRqNRrSNVMWLDRDGTLQP 491 yqt....................sLtitnvtpeDggtYtCvv<-* + ++++ ++ + ++ ++++ sL i n ++eD+g Y C+v mKIAA0466 492 GSAywerssyggiqmeqvqpnsfSLGIFNSRKEDEGQYECHV 533 V-set: domain 4 of 6, from 430 to 559: score 5.8, E = 0.16 *->qstvtqepprLLLASLfWptsvtvaeGgsvtLpCtysGtfddsssss +++v+ + + s +v eG++++++Ct++ + mKIAA0466 430 SISVEVASNA----------S-VVLEGEDLHFSCTVR----TVGRLQ 461 gtgsvyWyrqqpp.............Gekpeliiisyytyysysegngtv + +sv+W + ++++++ +++G + y+ +s+ +g mKIAA0466 462 ARFSVIWQL-VDRqnrrsnvmwldrdGTLQPGSA-----YWERSSYGGIQ 505 serfkgrvrfsgnpskgdfsLtIsnlqlsDsGtYyCa............. +e+ + ++fsL I n + +D+G Y C+ ++ + +++ mKIAA0466 506 MEQVQ----------PNSFSLGIFNSRKEDEGQYECHvtewvravdgewq 545 .....gggtrLtVl<-* +++ +t + ++ mKIAA0466 546 ivgerRASTLVSIT 559 ig: domain 5 of 8, from 579 to 667: score 17.1, E = 0.43 *->GesvtLtCsvs..gfgppdvtvtWlrngk.lt.gvlvtssenngdst +s+ L+C +++ ++ ++v+vtW+++ ++ ++++ +++++g+ + mKIAA0466 579 SDSFDLQCIIKphYPARVPVSVTWRFQPVgTVeFHDLVTFTRDGGVQ 625 yqt....................sLtitnvtpeDggtYtCvv<-* ++++++ ++++ ++ +++++ +L+i++++ +g Y Cv+ mKIAA0466 626 WGDksstfrtrtaiekaessnnvRLSISRASDTEAGKYQCVA 667 ig: domain 6 of 8, from 714 to 804: score 30.6, E = 3.7e-05 *->GesvtLtCsvs..gfgppdvtvtWlrngk.lt.gvlvtssenngdst + L+Csv+++ + +++ v W++ +++ +g l+ +++++ mKIAA0466 714 NRAIQLNCSVKsqTSPNSHFAVLWYVHKPsDAdGKLILKTTHSSAFE 760 yqt......................sLtitnvtpeDggtYtCvv<-* y+t ++++ +++ + +++ +++ sLt+++++ +D+g+Y+C+v mKIAA0466 761 YGTyaeeeglrgrlqferhvsgglfSLTVQRAEVSDSGSYYCHV 804 V-set: domain 5 of 6, from 699 to 831: score 57.5, E = 2.8e-13 *->qstvtqepprLLLASLfWptsvtvaeGgsvtLpCtysGtfddsssss ++v+ + r +t +e + L+C+++ + +s++ mKIAA0466 699 KLQVSK-SKR----------TLTLVENRAIQLNCSVK----SQTSPN 730 gtgsvyWyrqqpp.Gekpeliiisyytyysysegngtvserfkgrvrfsg +++ v Wy ++p++ +li + + ++g+ +e ++gr +f + mKIAA0466 731 SHFAVLWYV-HKPsDADGKLIL-KTTHSSAFEYGTYAEEEGLRGRLQFER 778 npskgdfsLtIsnlqlsDsGtYyCa...................gggtrL + s+g fsLt +++++sDsG YyC+ ++ +++ + ++ g t++ mKIAA0466 779 HVSGGLFSLTVQRAEVSDSGSYYCHveewllspnyawyklaeevSGRTEV 828 tVl<-* tV+ mKIAA0466 829 TVK 831 ig: domain 7 of 8, from 851 to 940: score 21.8, E = 0.016 *->GesvtLtCsvs..gfgppdvtvtWlrngk.lt.gvlvt.ssenngds L C v ++ + ++ v W+++++++++ ++v + s++ + + mKIAA0466 851 TRQIQLECVVLnrTSVASQLLVEWFVWKPnHPeREVVAhLSRDATFH 897 tyqt....................sLtitnvtpeDggtYtCvv<-* + + +++ +++ + ++++++ +L i+nv +D+gtY+C+v mKIAA0466 898 YGEQaaknnlkgrlhaespssgvyRLFIQNVAVQDSGTYSCRV 940 V-set: domain 6 of 6, from 836 to 967: score 26.4, E = 0.00066 *->qstvtqepprLLLASLfWptsvtvaeGgsvtLpCtysGtfddsssss + ++q ++ s++v e + L C + + +s s mKIAA0466 836 RLKLSQ-VQG----------SLSVLETRQIQLECVVL---NRTSVAS 868 gtgsvyWyrqqppGekpeliii.syytyysysegngtvserfkgrvrfsg + v W+ +p+++ ++++ + + ++ g + ++ +kgr + + mKIAA0466 869 QL-LVEWFV-WKPNHPEREVVAhLSRDATFHY-GEQAAKNNLKGRLH-AE 914 npskgdfsLtIsnlqlsDsGtYyCa...................gggtrL +ps+g + L I+n+ + DsGtY C ++ +++++ ++ +++ g t + mKIAA0466 915 SPSSGVYRLFIQNVAVQDSGTYSCRveewlpspsgvwykraedtAGQTAV 964 tVl<-* tV+ mKIAA0466 965 TVM 967 ig: domain 8 of 8, from 987 to 1102: score 9.5, E = 6.2 *->GesvtLtCsvs..gfgppdvtvtWl..rngk.lt.gvlvtssenngd + L Cs ++++ ++ v W++ r +++ +g l+ +++ mKIAA0466 987 KAAFQLDCSILsrSSQDSRFAVAWYslRTKGgGKrGSLGIDEQEEEE 1033 styqt............................................. ++++++++++++++ + +++ ++++++ +++ + ++ ++ mKIAA0466 1034 EEEDIsqeedsedptertvllsvgpdavfgpegspwegrlrfqrlsplly 1083 sLtitnvtpeDggtYtCvv<-* +Lt+++++p+D+g+Y+C+v mKIAA0466 1084 RLTVLEASPQDTGNYSCHV 1102 //