hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbg/mbg10008/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0465 ( 1485 res) mbg10008 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Spectrin Spectrin repeat 353.1 2.9e-102 9 GAS2 Growth-Arrest-Specific Protein 2 Domain 177.8 1.8e-49 1 efhand EF hand 56.4 6.3e-13 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- Spectrin 1/9 95 201 .. 1 108 [] 42.9 7.3e-09 Spectrin 2/9 204 311 .. 1 108 [] 42.6 8.6e-09 Spectrin 3/9 314 420 .. 1 108 [] 76.5 5.4e-19 Spectrin 4/9 423 530 .. 1 108 [] 32.2 1.2e-05 Spectrin 5/9 533 639 .. 1 108 [] 56.9 4.5e-13 Spectrin 6/9 642 749 .. 1 108 [] 51.3 2.2e-11 Spectrin 7/9 750 857 .. 1 108 [] 54.9 1.8e-12 Spectrin 8/9 860 966 .. 1 108 [] 45.1 1.6e-09 Spectrin 9/9 969 1103 .. 1 108 [] 8.8 0.13 efhand 1/2 1136 1164 .. 1 29 [] 29.1 0.0001 efhand 2/2 1172 1200 .. 1 29 [] 27.8 0.00025 GAS2 1/1 1211 1289 .. 1 75 [] 177.8 1.8e-49 Alignments of top-scoring domains: Spectrin: domain 1 of 9, from 95 to 201: score 42.9, E = 7.3e-09 *->lllqqFqrdadelesWisekeallssedygk.DlesvqaLlkkHeaf +l ++F +d++ l+ i +++ ++ + + ++ D++ ++++++ e++ mKIAA0465 95 ELAEKFWYDMAALLTTIKDTQDIVHDLESPGiDPSIIKQQVEAAETI 141 eaelaahqqdrvdqlnelaqkLieegedhpdseeikerleeLnerWeaLl ++e +++ ++++ + l+ +Li + + +++e+k+ ++e n +We+L mKIAA0465 142 KEETDGLH-EELEFIRILGADLIFACG-ETEKPEVKKSIDEMNNAWENLN 189 elaaeRkqkLee<-* + ++eR +kLe+ mKIAA0465 190 KTWKERLEKLED 201 Spectrin: domain 2 of 9, from 204 to 311: score 42.6, E = 8.6e-09 *->lllqqFqrdadelesWisekeallssedygk.DlesvqaLlkkHeaf + q+q ++ + W++ + l + + ++Dl v+++l +++f mKIAA0465 204 QAAVQYQDTLQAMFDWLDNTVIKLCTMPPVGtDLNTVKDQLNEMKEF 250 eaelaahqqdrvdqlnelaqkLieegedhpdseeikerleeLnerWeaLl + e+ ++q +++ ln++++ ++ + +d d + i+e l eL ++We+L mKIAA0465 251 KVEVYQQQ-IEMEKLNHQGELMLKKATDETDRDIIREPLTELKHLWENLG 299 elaaeRkqkLee<-* e++a R++kLe mKIAA0465 300 EKIAHRQHKLEG 311 Spectrin: domain 3 of 9, from 314 to 420: score 76.5, E = 5.4e-19 *->lllqqFqrdadelesWisekeallssedygk.DlesvqaLlkkHeaf l l qFq+ ++el+sW++ +e+ll + + +D+ ++ l kH + mKIAA0465 314 LALGQFQHALEELMSWLTHTEELLDAQRPISgDPKVIEVELAKHHVL 360 eaelaahqqdrvdqlnelaqkLieegedhpdseeikerleeLnerWeaLl ++++ ahq + v ++n+ + +L+e+++ ++d+ +++rle n++We++l mKIAA0465 361 KNDVLAHQ-ATVATVNKAGSELLESSA-GDDASSLRSRLETMNQCWESVL 408 elaaeRkqkLee<-* ++++eR+q+L+ mKIAA0465 409 QKTEEREQQLQS 420 Spectrin: domain 4 of 9, from 423 to 530: score 32.2, E = 1.2e-05 *->lllqqFqrdadelesWisekeallssedygk.DlesvqaLlkkHeaf ++ q F+ + +++++ ++ +e++ls + ++ +e + +l+ H ++ mKIAA0465 423 QQAQGFHSEIEDFLLELNRMENQLSASKPTGgLPETAREQLDTHMEL 469 eaelaahqqdrvdqlnelaqkLieegedhpdseeikerleeLnerWeaLl l a + + +ql + ++ ++ + +d + ++++ ++ L+++W a+ mKIAA0465 470 HSQLRAKE-EIYNQLLDKGRLMLLSRGDSGSGSKTEQSVALLEQKWHAVS 518 elaaeRkqkLee<-* +++eRk kLee mKIAA0465 519 SKVEERKSKLEE 530 Spectrin: domain 5 of 9, from 533 to 639: score 56.9, E = 4.5e-13 *->lllqqFqrdadelesWisekeallssedygk.DlesvqaLlkkHeaf l +Fq ++e+ +W++ +e+ l+ +++ l v ++++ H+ f mKIAA0465 533 SLATEFQNSLQEFINWLTLAEQSLNIASPPSlILNTVLSQIEEHKVF 579 eaelaahqqdrvdqlnelaqkLieegedhpdseeikerleeLnerWeaLl +e++ h+ d++ +l++++++L+ ++ +d ik l + +rWe++ mKIAA0465 580 ANEVNDHR-DQIIELDQTGNQLKFLSQ-KQDVVLIKNLLVSVQSRWEKVV 627 elaaeRkqkLee<-* ++ eR + L++ mKIAA0465 628 QRSIERGRSLDD 639 Spectrin: domain 6 of 9, from 642 to 749: score 51.3, E = 2.2e-11 *->lllqqFqrdadelesWisekeallssedygk.DlesvqaLlkkHeaf ++ qF+ + l W++++e l se + +D++ ++ +l kH++f mKIAA0465 642 KRAKQFHEAWKKLIDWLEDAESHLDSELEISnDPDKIKLQLSKHKEF 688 eaelaahqqdrvdqlnelaqkLieegedhpdseeikerleeLnerWeaLl ++ l + q + d+ ++++L+e+ + d+ ++ l e++++W+ ++ mKIAA0465 689 QKTLGGKQ-PVYDTTIRTGRALKEKTLLAGDTQKLDNLLGEVRDKWDTVC 737 elaaeRkqkLee<-* + eR++kLee mKIAA0465 738 GKSVERQHKLEE 749 Spectrin: domain 7 of 9, from 750 to 857: score 54.9, E = 1.8e-12 *->lllq..qFqrdadelesWisekeallssedygk.DlesvqaLlkkHe ll+++qF ++ l W+ + e++l+++++ ++Dl+ v +L++ H+ mKIAA0465 750 ALLFsgQFMDALQALVDWLYKVEPQLAEDQPVHgDLDLVMNLMDAHK 796 afeaelaahqqdrvdqlnelaqkLieegedhpdseeikerleeLnerWea f++el + + v+ l +++Lie + +d+ +k +l+eL +rW+ mKIAA0465 797 VFQKELGKRT-GTVQVLKRSGRELIEGS--RDDTTWVKGQLQELSTRWDT 843 LlelaaeRkqkLee<-* +++l ++ +Le+ mKIAA0465 844 VCKLSVSKQSRLEQ 857 Spectrin: domain 8 of 9, from 860 to 966: score 45.1, E = 1.6e-09 *->lllqqFqrdadelesWisekeallssedygk.DlesvqaLlkkHeaf ++ ++F + l++W+se+e++l+ + ++D e++q+L++ H++f mKIAA0465 860 KQAEEFRDTVHMLLEWLSEAEQTLRFRGALPdDTEALQSLIDTHKEF 906 eaelaahqqdrvdqlnelaqkLieegedhpdseeikerleeLnerWeaLl ++ ++ + v++ ++++++++ ++ ik+++ +++r+e++l mKIAA0465 907 MKKVEEKR-VDVNTAVAMGEAILAVCH-PDCITTIKHWITIIRARFEEVL 954 elaaeRkqkLee<-* ++a++ +q+Le mKIAA0465 955 TWAKQHQQRLET 966 Spectrin: domain 9 of 9, from 969 to 1103: score 8.8, E = 0.13 *->lllqqFqrdadelesWisekeallssedygk...DlesvqaLlkkHe +l + ++el++Wi+ +e++l ++d ++ ++ + v+aL++ H+ mKIAA0465 969 SELVANAELLEELLAWIQWAETTLIQRDQEPipqNIDRVKALITEHQ 1015 afeaelaahqqdrvdqlne.........laqkLieeged........... f++e+ q + vd ++++ ++++ +++ ++e+++++++++ +++++ mKIAA0465 1016 SFMEEMTRKQ-PDVDRVTKtykrksvepTHAPFMEKSRSgsrkslnqptp 1064 .....hpdseeikerleeLnerWeaLlelaaeRkqkLee<-* ++ + +se+ r+++L +rW+++ la eR++kL + mKIAA0465 1065 ppmpiLSQSEAKNPRINQLSARWQQVWLLALERQRKLND 1103 efhand: domain 1 of 2, from 1136 to 1164: score 29.1, E = 0.0001 *->elkeaFkefDkDgDGkIsfeEfkaalkkl<-* ++ ++F+ +DkD+DGkI+++Ef++++ + mKIAA0465 1136 RVMDFFRRIDKDQDGKITRQEFIDGILAS 1164 efhand: domain 2 of 2, from 1172 to 1200: score 27.8, E = 0.00025 *->elkeaFkefDkDgDGkIsfeEfkaalkkl<-* e+ ++ ++fD+DgDG+I++ Ef+aal+ mKIAA0465 1172 EMTAVADIFDRDGDGYIDYYEFVAALHPN 1200 GAS2: domain 1 of 1, from 1211 to 1289: score 177.8, E = 1.8e-49 *->dkldDeVkrivedPPCkCpdkFrveqvseGKYR......fGDsqlLr dk++DeV+r+v++ CkC+++F+veq++e+KYR +++fGDsq+Lr mKIAA0465 1211 DKIEDEVTRQVAQ--CKCAKRFQVEQIGENKYRfflgnqFGDSQQLR 1255 lvrilrshVMVRVGGGWetLdeyLlKhDPCRasq<-* lvrilrs+VMVRVGGGW++Lde+L+K+DPCRa++ mKIAA0465 1256 LVRILRSTVMVRVGGGWMALDEFLVKNDPCRARG 1289 //