hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg07539/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0463  ( 1529 res)   mbg07539

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
IPT      ig-like, plexins, transcription factors        283.3    1.8e-80   4
PSI      domain found in Plexins, Semaphorins and Int   116.2    3.8e-30   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PSI        1/3     145   195 ..     1    56 []    54.2  1.7e-11
PSI        2/3     290   337 ..     1    56 []    34.7  1.2e-05
PSI        3/3     438   491 ..     1    56 []    43.6  2.7e-08
IPT        1/4     492   587 ..     1   111 []    84.9  9.6e-21
IPT        2/4     588   673 ..     1   111 []    97.6  1.5e-24
IPT        3/4     675   775 ..     1   111 []    86.9  2.4e-21
IPT        4/4     777   872 ..     1   111 []    34.6  1.4e-05

Alignments of top-scoring domains:
PSI: domain 1 of 3, from 145 to 195: score 54.2, E = 1.7e-11
                   *->rCsqygvtsCseCllardpygCgWCssegrCtrgerCderrgsrqnw
                       C+qy  t+C+eCl+++dp+ CgWC+++++C+r+  C     + +++
   mKIAA0463   145    SCEQY--TTCGECLSSGDPH-CGWCALHNMCSRRDKCQ----RAWEA 184  

                   ssg..pssqCp<-*
                    +     sqC    
   mKIAA0463   185 NRFaaSISQCM    195  

PSI: domain 2 of 3, from 290 to 337: score 34.7, E = 1.2e-05
                   *->rCsqygvtsCseCllardpygCgWCssegrCtrg.erCderrgsrqn
                      +Cs++  + C +C+ +  +  C+WC++++ Ct+ +  C+ ++g r n
   mKIAA0463   290    NCSAH--QLCLSCVNSAFR--CHWCKYRNLCTHDpTTCSFQEG-RIN 331  

                   wssgpssqCp<-*
                   +s      Cp   
   mKIAA0463   332 VSE----DCP    337  

PSI: domain 3 of 3, from 438 to 491: score 43.6, E = 2.7e-08
                   *->rCsqygvtsCseCllardpygCgWCssegrCtrgerCderrgsrqnw
                       C++++  sC+ Cl a++ ++CgWCs+e+rCt +++C++   + ++w
   mKIAA0463   438    KCAAQR-ESCGLCLKADHKFECGWCSGERRCTLHQHCPS---TSSPW 480  

                   ssg..pssqCp<-*
                   +++++++ +C+   
   mKIAA0463   481 LDWssHNVKCS    491  

IPT: domain 1 of 4, from 492 to 587: score 84.9, E = 9.6e-21
                   *->dPvItrisPssGplsGGteritlcGknLdsdgsvvfvrvgvgGrvWe
                      +P It+i   sGp +GGt r+t++G nL+ d+s++ + v v+    +
   mKIAA0463   492    NPQITEILTVSGPPEGGT-RVTIHGVNLGLDFSEIAHHVQVA----G 533  

                   vpCtflpsdvhGkdsstaivCrtPpylnqspgpgsvpvrvtgevgfdngg
                   vpCt++p +++    +++ivC+++++     g+ s+pvr+  ++g +  +
   mKIAA0463   534 VPCTPIPGEYI---IAEQIVCEMGHAVI---GTTSGPVRL--CIGECKPE 575  

                   vrtelsppspFtYv<-*
                   ++t+  + +++t+v   
   mKIAA0463   576 FMTK--SHQQYTFV    587  

IPT: domain 2 of 4, from 588 to 673: score 97.6, E = 1.5e-24
                   *->dPvItrisPssGplsGGteritlcGknLdsdgsvvfvrvgvgGrvWe
                      +P+++++sP +Gp sGGt  +t++G++L++ gs+v v++g      +
   mKIAA0463   588    NPSVLSLSPIRGPESGGT-MVTITGHYLGA-GSSVAVYLG------N 626  

                   vpCtflpsdvhGkdsstaivCrtPpylnqspgpgsvpvrvtgevgfdngg
                   + C+f  +      s+++ivC++Pp++n   g g+vpv    +v++d++ 
   mKIAA0463   627 QTCEFYGR------SMNEIVCVSPPSSN---GLGPVPV----SVSVDRAR 663  

                   vrtelsppspFtYv<-*
                   v+++    ++F+Y    
   mKIAA0463   664 VDSS----LQFEYI    673  

IPT: domain 3 of 4, from 675 to 775: score 86.9, E = 2.4e-21
                   *->dPvItrisPssGplsGGteritlcGknLdsdgsvvfvrvgvgGr.vW
                      dP+++ri+P++++ sG t  +t++G nLd+ +++++vrv+ +G++  
   mKIAA0463   675    DPRVQRIEPEWSITSGHT-PLTITGFNLDV-IQEPRVRVKFNGKeS- 718  

                   evpCtflpsdvhGkdsstaivCrtPpylnqsp.gpgsvpvrvtgevgfdn
                    + Ct++++        t+++C +P+ + ++++g  +v+ ++  e+gf  
   mKIAA0463   719 VNVCTVVNT--------TTLTCLAPSLTSDYRpGLDTVERPD--EFGFLF 758  

                   ggvrtel.sppspFtYv<-*
                    +v+++l  ++  F Y+   
   mKIAA0463   759 NNVQSLLiYNDTKFIYY    775  

IPT: domain 4 of 4, from 777 to 872: score 34.6, E = 1.4e-05
                   *->dPvItrisPssGplsGGteritlcGknLds...dgsvvfvrvgvgGr
                      +P+++ +sP+    +   + i l+GknL ++ + g    ++v  g  
   mKIAA0463   777    NPTFELLSPTGILDQKPGSPIILKGKNLCPpasGGAKLNYTVMIG-- 821  

                   vWevpCtflpsdvhGkdsstaivCrtPpylnqspgpgsvpvrvtgevgf.
                     e+pCt++        s+t+++C+ P  ++q  + + v+v +   v+ +
   mKIAA0463   822 --ETPCTVTV-------SETQLLCEPPNLTGQ--HKVMVHVGG--MVFSp 858  

                   dnggvrtelsppspFtYv<-*
                   ++  v ++    s +t     
   mKIAA0463   859 GSVSVISD----SLLTLP    872  

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