hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg03064/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0461  ( 853 res)   mbg03064

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
ZnF_C2H2 zinc finger                                     65.4      7e-15   6

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
ZnF_C2H2   1/6       1    24 [.     1    23 []    25.0     0.01
ZnF_C2H2   2/6      31    54 ..     1    23 []    17.4      2.1
ZnF_C2H2   3/6      60    82 ..     1    23 []    22.2    0.075
ZnF_C2H2   4/6      88   110 ..     1    23 []    11.3       17
ZnF_C2H2   5/6     211   234 ..     1    23 []    12.0       14
ZnF_C2H2   6/6     255   280 ..     1    23 []     5.4       78

Alignments of top-scoring domains:
ZnF_C2H2: domain 1 of 6, from 1 to 24: score 25.0, E = 0.01
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                       kC+i C + f s++ + +Hm+++H   
   mKIAA0461     1    TKCKI-CEWAFESEpLFLQHMKdTH    24   

ZnF_C2H2: domain 2 of 6, from 31 to 54: score 17.4, E = 2.1
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      y+C++ C+++ s +++   H r +H   
   mKIAA0461    31    YVCQV-CQYRSSLYsEVDVHFRmIH    54   

ZnF_C2H2: domain 3 of 6, from 60 to 82: score 22.2, E = 0.075
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      + Cp+ C k+f++ +a+++H+++H   
   mKIAA0461    60    LLCPY-CLKVFKNGnAFQQHYMRH    82   

ZnF_C2H2: domain 4 of 6, from 88 to 110: score 11.3, E = 17
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ C  +f  +++ ++H  +H   
   mKIAA0461    88    YHCNK-CRLQFLFAkDKIEHKLQH    110  

ZnF_C2H2: domain 5 of 6, from 211 to 234: score 12.0, E = 14
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                       +C++ C +s++  +a+ +Hm + H   
   mKIAA0461   211    VHCSL-CRYSTCCSrAYANHMInNH    234  

ZnF_C2H2: domain 6 of 6, from 255 to 280: score 5.4, E = 78
                   *->ykCpigCgksfssk.aLkrHmr...vH<-*
                      + C+  C + +s  +a+ +H+  +++H   
   mKIAA0461   255    LACTS-CTFATSVGdAMAKHLVfnpSH    280  

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