hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg03064/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0461  ( 853 res)   mbg03064

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
DDE      DDE superfamily endonuclease                    43.0    6.6e-09   1
zf-C2H2  Zinc finger, C2H2 type                          30.4      4e-05   6

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
zf-C2H2    1/6       1    24 [.     1    24 []    16.4      0.7
zf-C2H2    2/6      31    54 ..     1    24 []    12.3      6.4
zf-C2H2    3/6      60    82 ..     1    24 []    18.2     0.19
zf-C2H2    4/6      88   110 ..     1    24 []     6.2       25
zf-C2H2    5/6     211   234 ..     1    24 []    -0.0       98
zf-C2H2    6/6     255   280 ..     1    24 []     1.9       64
DDE        1/1     557   763 ..     1   240 []    43.0  6.6e-09

Alignments of top-scoring domains:
zf-C2H2: domain 1 of 6, from 1 to 24: score 16.4, E = 0.7
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                       kC+ +C  +F +   + +H++ +H   
   mKIAA0461     1    TKCK-ICEWAFESEPLFLQHMKDtH    24   

zf-C2H2: domain 2 of 6, from 31 to 54: score 12.3, E = 6.4
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                      y+C+ +C+++ s  s+   H r+ H   
   mKIAA0461    31    YVCQ-VCQYRSSLYSEVDVHFRMiH    54   

zf-C2H2: domain 3 of 6, from 60 to 82: score 18.2, E = 0.19
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                        Cp +C k+F++   +++H ++H   
   mKIAA0461    60    LLCP-YCLKVFKNGNAFQQHYMRH    82   

zf-C2H2: domain 4 of 6, from 88 to 110: score 6.2, E = 25
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y C+ +C   F   ++   H+  H   
   mKIAA0461    88    YHCN-KCRLQFLFAKDKIEHKLQH    110  

zf-C2H2: domain 5 of 6, from 211 to 234: score -0.0, E = 98
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                        C+  C +s + +  + +H+  +H   
   mKIAA0461   211    VHCS-LCRYSTCCSRAYANHMINnH    234  

zf-C2H2: domain 6 of 6, from 255 to 280: score 1.9, E = 64
                   *->ykCpfdCgksFsrksnLkrHlrt...H<-*
                        C+  C  + s  + + +Hl  +++H   
   mKIAA0461   255    LACT-SCTFATSVGDAMAKHLVFnpsH    280  

DDE: domain 1 of 1, from 557 to 763: score 43.0, E = 6.6e-09
                   *->ippediFNaDETGlfwgllpngtVvgssekegrrvpgkkrglkrrlT
                      +p   i + DE +lf++     +   ss+ +++  +++ +   + ++
   mKIAA0461   557    LPLSMIVAIDEISLFLDTEV--L---SSDDRKENALQTVGT-GEPWC 597  

                   vlicanaaGgekLpPlvIgKgknprsfkfYlaekkikplpveyranknaW
                    ++ a++a+g  Lp lv ++g+  r+           p+ + ++a ++++
   mKIAA0461   598 DVVLAILADGTVLPTLVFFRGQANRFANV--------PDSILLEAKDSGY 639  

                   mTseifeeWLekvFdprmkleylrpktegrkvLLlLDghgaHprtdefVr
                    ++ei+e W ++v+ ++++        +  k +L++D h++H  ++e   
   mKIAA0461   640 SDDEIMELWSTRVWKKHTA-------CQHSKSMLVMDCHRTHL-SEEV-- 679  

                   katcelnnIillflPahstsllQPlDqGvfsplKraYRrkllkkilagie
                    a++    + +++ Pa+++s++QPlD+ +  + K++  +k+ +++++   
   mKIAA0461   680 LALLSASSTLPAVVPAGCSSKIQPLDVCIKRTVKNFLHKKWKEQAREMAD 729  

                   slskeqkskltnpqktlnlldaiswiakAWnkav......kketIvsgW<
                      +                d +  ++  W  +v +  ++++e  ++++ 
   mKIAA0461   730 AACD---------------SDVLLQLVLVWLGEVlgvigdSPELVQRSF  763  

                   -*
                     
   mKIAA0461     -    -    

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