hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm03155/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0460  ( 1385 res)   mpm03155

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
DUF618     Protein of unknown function, DUF618           74.7    1.9e-18   1
Extensin_2 Extensin-like region                        -128.8       0.18   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
DUF618       1/1      31    94 ..     1    71 []    74.7  1.9e-18
Extensin_2   1/1    1093  1385 .]     1   385 []  -128.8     0.18

Alignments of top-scoring domains:
DUF618: domain 1 of 1, from 31 to 94: score 74.7, E = 1.9e-18
                   *->snnRkKLvNlLYLANDVvQnSKvrKgpETFvdeFspvlveAfahiie
                       +  ++L  l+YLANDV+Qn K rK +  F ++F+ vl+eA a +  
   mKIAA0460    31    YP--HRLN-LFYLANDVIQNCK-RKNAIIFRESFADVLPEAAALVK- 72   

                   egddkvKkklkRvinIWkeRnvFs<-*
                     d +v k+++R+++IW++Rnv+    
   mKIAA0460    73 --DPSVSKSIERIFKIWEDRNVYP    94   

Extensin_2: domain 1 of 1, from 1093 to 1385: score -128.8, E = 0.18
                   *->lltlvvalvslslpseasakYsYsSPPPpekpYvYkSPPpPspkyvy
                      l+ +  +++    p   +   s++S    +  +  + PP P     +
   mKIAA0460  1093    LTGFKTTPYKERAPQFQESVTSFRSNSFNS-TFEHHLPPSPL----E 1134 

                   kSPPPpkkpYvYsSPPPPsyvykSPPPPkpyvYkSPPpP...kyvYkSPP
                   +  P          P  P     S PP        PP+ +++ +  + P 
   mKIAA0460  1135 HGAPFQ------REPVGP----SSAPPA-------PPKDhggIFSREAPT 1167 

                   pPvykYkSPPPPthsppPpyvykSPPPPpkkyvykSpPpptPvYkYkSPP
                     + +  S P           +  PPPPp     + +P p+P      PP
   mKIAA0460  1168 HLPSVDLSNPFTK---EASLAHAGPPPPP--GEHSGVPFPPP------PP 1206 

                   PPpyvYkspPpPvkkripyvYkSPPPPpPYvYkSpPppvkkyiykspppp
                   PPp+   s+       +p+    PPPPp  v  S   p      + pp p
   mKIAA0460  1207 PPPPGELSSG---GTGVPFATPAPPPPP--VDHSGVVPF-----PTPPLP 1246 

                   ephkYvYkSPPPPpPYvyesvpeqkikYvYkSPPPPkksYkspsppkyVY
                   e+      S  P     + s ++  +   +     P+             
   mKIAA0460  1247 EHGVTGAVSVFPKD---HSSLLQGTMAEHFGVLTGPRD-----------L 1282 

                   kSpPpPvipykYkSPPPPkkkyspaP...rkpyvYkSPPPPtyvYkSpPp
                   + p         + P  P ++  pa +++      +S  P ++ ++    
   mKIAA0460  1283 NGPGLNRSRESLSLPSHPLEHLGPALgggGGGNTSSSGLPLSPAHRDAIG 1332 

                   PykpptppkiyksPPPPtPvyvYkspPpippiksssppPvyvYkSpPppv
                        + ++i +sP P              +     p  ++  + p    
   mKIAA0460  1333 -----RSGMILRSPRPD-------------F----RPREAFLGRDPFHSL 1360 

                   ysPPPPyvYssPPPPvyvynsaPvykksPPkhhYiYsSPPPphh<-*
                   + P PP+v  +P         aP       k ++      Pp +   
   mKIAA0460  1361 KRPRPPFVRGPPFF-------AP-------KRPFF-----PPRY    1385 

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