hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbg/mbg00904/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0458 ( 882 res) mbg00904 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Atrophin-1 Atrophin-1 family 2248.6 0 1 Extensin_2 Extensin-like region -141.2 0.58 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- Extensin_2 1/1 59 393 .. 1 385 [] -141.2 0.58 Atrophin-1 1/1 1 882 [] 1 1064 [] 2248.6 0 Alignments of top-scoring domains: Extensin_2: domain 1 of 1, from 59 to 393: score -141.2, E = 0.58 *->lltlvvalvslslpseasakYsYsSPPPpekpYvYkSPPpPspkyvy +l + +l+ ps a +s PP P +P mKIAA0458 59 QQMLQAQPPALQAPSGAA--SAPSTAPPG-------TPQLPT----- 91 kSPPPpkkpYvYsSPP..PPsyvykSPPPPkpyvYkSPPpPkyvYkSPPp + P P+ PP++ P S PP + P + + + P mKIAA0458 92 QGPTPS----ATAVPPqgSP---ATSQPPNQTQSTVAPAAHTHIQQAPTL 134 PvykYkSPPPPthsppPpyvykSPPPPpkkyvykSpPpptPvYkYkSPPP ++ SP PP PP + + P p P + PP mKIAA0458 135 HPPRLPSPHPPL------QPMTAPPSQS-----SAQPHPQPSLHGQGPPG 173 Pp.....yvYkspPpPvkk...ripyvYkSPPPPpPYvYkSpPppvkkyi P + ++++ ++p pP + + + p + P P+P + p + + mKIAA0458 174 PHslqtgPLLQHPGPPQPFglpSQPSQGQGPLGPSP---AAAHPHSTIQL 220 yksppppephkYvYkSPPPPpPYvyesvpeqkikYvYkSPPPPkksYksp s + +p+++ P PP P +p +ik PPP ++ + p mKIAA0458 221 PASQSALQPQQPPREQPLPPAP---LAMP--HIK-----PPPTTPIPQLP 260 sp...pkyVYkSpPpPvipykYkSPPPPkkkyspaP.rkpyvYkSPPPPt +p+ + ++ + S P P PPPP k+ ++ + +++ PPP mKIAA0458 261 APqahKHPPHLSGPSPF-SLNANLPPPPALKPLSSLsTHHPPSAHPPPLQ 309 yvYkSpPpPykpptppkiyksPPPPtPvyvYkspPpippiksssppPvyv + +S P P+ sP P +s Pp + +P mKIAA0458 310 LMPQSQPLPS----------SPAQPPGLTQSQSLPP-----PAASHPTTG 344 YkSpPppvysPPPPyvYssPPPPvyvynsaPvykksPPkhhYiYsSPPPp P ++ P P+v PPP + s P + ++PP + + s PP mKIAA0458 345 LHQVPSQSPFPQHPFVPGGPPPITP--PSCP-PTSTPPAGPSSSSQPPCS 391 hh<-* mKIAA0458 392 AA 393 Atrophin-1: domain 1 of 1, from 1 to 882: score 2248.6, E = 0 *->GkhsmrtrlyrGststllSGRKKqPasPdGraaavsvdvrssGknsP mKIAA0458 - ----------------------------------------------- - saastiSnDsKAEAvKKsAKKVkeeaASglknTKRqREKvAsDtEDtDRA mKIAA0458 - -------------------------------------------------- - tsKKtKtqEisrPtsPveGenlsSdsrsvNDEGssDPKDiDqDfrsvsPs EisrP+sP+eGe++sSdsrsvNDEGssDPKDiDqD+rs+sPs mKIAA0458 1 --------EISRPNSPSEGEGESSDSRSVNDEGSSDPKDIDQDNRSTSPS 42 lPsPqdlrslsdaSAsqqgLqaQPlalqlPSgaAsaqstGGlPPGteklP +PsPqd++s+sd+SA+qq+LqaQP+alq+PSgaAsa+st +PPGt +lP mKIAA0458 43 IPSPQDNESDSDSSAQQQMLQAQPPALQAPSGAASAPST--APPGTPQLP 90 TlaPsPsattlPPasSsAtaqPmRFPysssSsvaaAAsslissssslasP T +P+Psat +PP++S+At+qP P++++S+va+AA++ i++ ++l++P mKIAA0458 91 TQGPTPSATAVPPQGSPATSQP---PNQTQSTVAPAAHTHIQQAPTLHPP 137 flaSqalPlyPmsaPPstsLsvSaQPPKytQPSLhsQavpsPHsLqtGPL +l+S+++Pl+Pm+aPPs+s SaQP ++QPSLh+Q++p+PHsLqtGPL mKIAA0458 138 RLPSPHPPLQPMTAPPSQS---SAQP--HPQPSLHGQGPPGPHSLQTGPL 182 LQgPgPPqPyGRLlanSsagqGPlgPStaAqstAHPPvstHHstiQlqas LQ+PgPPqP+G L + s+gqGPlgPS+aA AHP HstiQl+as mKIAA0458 183 LQHPGPPQPFG-LPSQPSQGQGPLGPSPAA---AHP-----HSTIQLPAS 223 QsalQqQQqhrenslPPaPlAfPHPLEGGssikahPyamiPsLGsLRPYP QsalQ+QQ++re++lPPaPlA+PH ik++P+++iP+L P mKIAA0458 224 QSALQPQQPPREQPLPPAPLAMPH-------IKPPPTTPIPQL------P 260 agqAHkhPPHLSqvSyfsanaNlPPvssalkslSSlStgsyPsaHPsPlQ a+qAHkhPPHLS++S+fs naNlPP+ +alk+lSSlSt+++PsaHP+PlQ mKIAA0458 261 APQAHKHPPHLSGPSPFSLNANLPPP-PALKPLSSLSTHHPPSAHPPPLQ 309 LgPQsaPlPfsPvqPtvlTsSasLstviatvASsPatyklasvPsqsPyg L+PQs+PlP+sP+qP++lT+S+sL+ +++AS+P+t+ l++vPsqsP++ mKIAA0458 310 LMPQSQPLPSSPAQPPGLTQSQSLP---PPAASHPTTG-LHQVPSQSPFP 355 krafvPGayktiTPPsykPGsPPsFRTsTPPaYRGtSssaqPGtFKPgSa +++fvPG++++iTPPs++P TsTPPa G+Sss+qP P+Sa mKIAA0458 356 QHPFVPGGPPPITPPSCPP-------TSTPPA--GPSSSSQP----PCSA 392 aVssGglvPaaPSgLPsLPPPPAAPAsGPPLsAvQIKeEaldEaEePESP aVssGg vP+aPS+ PL+AvQIKeEaldEaEePESP mKIAA0458 393 AVSSGGSVPGAPSC---------------PLPAVQIKEEALDEAEEPESP 427 vPPaRSPSPePkVVDvPSHASQSARFyKHLDRGyNSCARsDLYFvPLeGS +PP+RSPSPeP+VVD+PSHASQSARFyKHLDRGyNSCAR+DLYF+PL+GS mKIAA0458 428 PPPPRSPSPEPTVVDTPSHASQSARFYKHLDRGYNSCARTDLYFMPLAGS 477 KLAKKRedlvEKvkREAEQkAREEkEREkEkEkEkEREREkERElERavk KLAKKRe+++EK+kREAEQkAREE+EREkEkEkE+ERERE+ERE+ERa+k mKIAA0458 478 KLAKKREEAIEKAKREAEQKAREEREREKEKEKEREREREREREAERAAK 527 kAsssAqEGRAPledPsLsGPvhmRPsFEPPgsavAaVPPYlGPDTPALR sssA+EGR l+dP+LsGP+hmRPsFEPP++++AaVP PDTPALR mKIAA0458 528 A-SSSAHEGR--LSDPQLSGPGHMRPSFEPPPTTIAAVP----PDTPALR 570 TLSEYARPHVMSPtNRNHPFYvPLnavDPGLLaYnvPaLYsvDPaiRERE TLSEYARPHVMSPtNRNHPFY+PLn++DP LLaY++P+LY+vDP+iRERE mKIAA0458 571 TLSEYARPHVMSPTNRNHPFYMPLNPTDP-LLAYHMPGLYNVDPTIRERE 619 LREREiREREiRERdLRdRlKPGFEVKPsELdPLHgvtnPGldhFaRHsa LREREiREREiRER+LR+R+KPGFEVKP+ELdPLH++tnP ++hFaRHsa mKIAA0458 620 LREREIREREIRERELRERMKPGFEVKPPELDPLHPATNP-MEHFARHSA 668 LalqPaPaGlHPFAsFHPsLnPLERERLALAAGPaLRPdMSYadRLAAER L+++Pa aG+HPFAsFHP+LnPLERERLAL AGP+LRP+MSY+dRLAAER mKIAA0458 669 LTIPPA-AGPHPFASFHPGLNPLERERLAL-AGPQLRPEMSYPDRLAAER 716 iHAERvAaLtsDPLARLQMlNVTPHHHQHSHIHSHLHLHQQDalHaaSAs iHAER+A+LtsDPLARLQM+NVTPHHHQHSHIHSHLHLHQQD+lH++SA+ mKIAA0458 717 IHAERMASLTSDPLARLQMFNVTPHHHQHSHIHSHLHLHQQDPLHQGSAG 766 PVHPLvDPLaaGsHLaRiPYPaGTLPNPLLgqPlHEnEvLRHqlFaaPYP PVHPLvDPL+aG+HLaR+PYP+GTLPNPLLgqP+HE+E+LRH++F++PYP mKIAA0458 767 PVHPLVDPLTAGPHLARFPYPPGTLPNPLLGQPPHEHEMLRHPVFGTPYP 816 RDLPaalsaPMSAAHQLQAMHAQSAELQRLAlEqQQWLHaHhhlHsvhLP RDLP+a+++PMSAAHQLQAMHAQSAELQRLA+E QQWLH+H+h+H++hLP mKIAA0458 817 RDLPGAIPPPMSAAHQLQAMHAQSAELQRLAME-QQWLHGHPHMHGGHLP 865 aQEDYYSrLKKEsDKqL<-* +QEDYYSrLKKE+DKqL mKIAA0458 866 SQEDYYSRLKKEGDKQL 882 //