hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg01969/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0453  ( 1918 res)   mbg01969

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
DUF1162  Protein of unknown function (DUF1162)          205.8    6.4e-58   1
UBA      UBA/TS-N domain                                 44.4    2.5e-09   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
UBA        1/1     166   205 ..     1    45 []    44.4  2.5e-09
DUF1162    1/1     792  1102 ..     1   348 []   205.8  6.4e-58

Alignments of top-scoring domains:
UBA: domain 1 of 1, from 166 to 205: score 44.4, E = 2.5e-09
                   *->ideelvkqLreMGGGvfsreeakkALratnnnsDverAvewLleh<-
                      + e ++++L+e+G   fs+++++kAL+ + ++  + +A+ wL+++  
   mKIAA0453   166    VLELQLARLQELG---FSMDDCRKALLVCQGQ--LKKAASWLFKN   205  

                   *
                    
   mKIAA0453     -   -    

DUF1162: domain 1 of 1, from 792 to 1102: score 205.8, E = 6.4e-58
                   *->kvdlLdLsvhvrkipGtaqalvvsifsPYwiiNkTgrmLiyksedtk
                      + +  ++++  +   G+   l++ i++PYw+iNkTg++Li++++++k
   mKIAA0453   792    NLT-IRIACRAE---GS---LKIFISAPYWLINKTGLPLIFRQDNAK 831  

                   veaagqieeheeaedrhvkPPEFGlmFSFkdenSWffkknkvrlGkarid
                     aagq+eehe a+     P    l+F ++d++   ++ +  r+G+    
   mKIAA0453   832 TDAAGQFEEHELARS--LSP----LLFCYADKE--QPNLCTMRIGRGIHP 873  

                   nse..WSekfSlDtvGsvgevec..rakhenknqeYnlGvsikessGkfs
                   +++++W+  fSlD  ++v ++++ ++++   +   Yn+G+++k ++G++ 
   mKIAA0453   874 EGMpgWCQGFSLDGGSGVRALKViqQGN--RPGLIYNIGIDVKKGRGRYI 921  

                   lTkiVTftPRyivkNkskvtleFmqvrEegFqddsdk.dkilhipseeci
                   +T  V f+PRy++ Nks+ +l F q rE++   +   ++  ++  +  ++
   mKIAA0453   922 DTCMVIFAPRYLLDNKSSHKLAFAQ-REFARGQGTANpNGYISTLPGSSV 970  

                   pltWprniqkrkLllvrv..seckhwsspfFyikevgstllklrksDDdd
                    ++Wprn+   +Ll+vr+ ++ ++ ws +f     ++s+++++r+     
   mKIAA0453   971 VFHWPRNDY-DQLLCVRLmdVPNCIWSGGF-EVNKNNSFHINMRD----- 1013 

                   edeeeggirveVnlteatffItftdyhtgpwPfrIkNhttvdilTYyQkg
                     ++ +++rve++l  at  I+f+d +  p+PfrI+N+++v+++ + Q g
   mKIAA0453  1014 TLGKCFFLRVEITLRGATYRISFSDTDQLPPPFRIDNFSKVPVV-FTQHG 1062 

                   skpasegkkddavderflrsfksietvlpPgseadYaWDdPtgpsKkLvl
                      a +                 ++t ++P  ++dYaWD Pt+p   ++l
   mKIAA0453  1063 V--AEPR----------------LRTEVKPMMSLDYAWDEPTLPP-FITL 1093 

                   ev.gknite<-*
                   +v+g+   e   
   mKIAA0453  1094 TVkGAGSSE    1102 

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