hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mid/mid16058/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0452  ( 574 res)   mid16058

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
TPR_2    Tetratricopeptide repeat                        35.5    1.2e-06   3
TPR_1    Tetratricopeptide repeat                        17.7       0.28   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
TPR_2      1/3     276   309 ..     1    34 []    10.4       13
TPR_1      1/2     466   499 ..     1    34 []     2.0       21
TPR_2      2/3     466   499 ..     1    34 []     6.6       37
TPR_1      2/2     507   540 ..     1    34 []    18.4     0.17
TPR_2      3/3     507   540 ..     1    34 []    23.1   0.0066

Alignments of top-scoring domains:
TPR_2: domain 1 of 3, from 276 to 309: score 10.4, E = 13
                   *->aealynlGlayyklgdyeeAleayekAleldPnn<-*
                      a +l+  G++ + +g+ + A++ +e++ e   ++   
   mKIAA0452   276    AIFLFFAGRIEAIKGNIDAAVRRFEECCEAQQHW    309  

TPR_1: domain 1 of 2, from 466 to 499: score 2.0, E = 21
                   *->aeayynlGnaylklgkydeAieayekALeldPnn<-*
                        +   +G+++  lg+ +eA+e ++   + + +    
   mKIAA0452   466    CLVKLLKGLCLKYLGRIQEAEENFRSISANEKKI    499  

TPR_2: domain 2 of 3, from 466 to 499: score 6.6, E = 37
                   *->aealynlGlayyklgdyeeAleayekAleldPnn<-*
                        +  + Gl++ +lg+ +eA+e ++   + +++    
   mKIAA0452   466    CLVKLLKGLCLKYLGRIQEAEENFRSISANEKKI    499  

TPR_1: domain 2 of 2, from 507 to 540: score 18.4, E = 0.17
                   *->aeayynlGnaylklgkydeAieayekALeldPnn<-*
                      ++a+  l+++++++g+ +eAi+ +e A +   n+   
   mKIAA0452   507    PNALLELALLFMEQGRNEEAIKLLESAKQNYKNY    540  

TPR_2: domain 3 of 3, from 507 to 540: score 23.1, E = 0.0066
                   *->aealynlGlayyklgdyeeAleayekAleldPnn<-*
                      + al  l+l+ +++g+ eeA++++e A + ++n+   
   mKIAA0452   507    PNALLELALLFMEQGRNEEAIKLLESAKQNYKNY    540  

//