hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj00177/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0449  ( 171 res)   mfj00177

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
WD40     WD40 repeats                                    90.8    1.6e-22   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
WD40       1/3      26    64 ..     1    46 []    22.0    0.083
WD40       2/3      67   107 ..     1    46 []    33.6  2.7e-05
WD40       3/3     110   147 ..     1    46 []    35.2  8.9e-06

Alignments of top-scoring domains:
WD40: domain 1 of 3, from 26 to 64: score 22.0, E = 0.083
                   *->t.kllrtlk.gHtgespVtsvafspdggssdspnllasgs.Dgtirl
                      t  +++ +++ H +  ++ ++a+  d        +l+sgs+D+ i+ 
   mKIAA0449    26    TiGPTHNFEpPHYD--GIECLAIQGD--------ILFSGSrDNGIKK 62   

                   Wd<-*
                   Wd   
   mKIAA0449    63 WD    64   

WD40: domain 2 of 3, from 67 to 107: score 33.6, E = 2.7e-05
                   *->t.kllrtlk.gHtgespVtsvafspdggssdspnllasgs.Dgtirl
                      +++l++ ++++H++  +V+++af p         +l+s+++ g i++
   mKIAA0449    67    QqELIQQIPnAHKD--WVCALAFVPGR------PMLLSACrAGFIKV 105  

                   Wd<-*
                   W+   
   mKIAA0449   106 WN    107  

WD40: domain 3 of 3, from 110 to 147: score 35.2, E = 8.9e-06
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      + +++ ++kgH++  p+++++ ++         +++++s+D+ ++lW
   mKIAA0449   110    NfTPIGEIKGHDS--PINAICTNSK--------HIFTASsDCRVKLW 146  

                   d<-*
                   +   
   mKIAA0449   147 N    147  

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