hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj00177/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0449  ( 171 res)   mfj00177

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
WD40     WD domain, G-beta repeat                        93.1    5.7e-24   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
WD40       1/3      28    64 ..     1    38 []    24.2    0.003
WD40       2/3      70   107 ..     1    38 []    34.6  2.3e-06
WD40       3/3     112   147 ..     1    38 []    34.5  2.5e-06

Alignments of top-scoring domains:
WD40: domain 1 of 3, from 28 to 64: score 24.2, E = 0.003
                   *->eclavl..gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                       +++ +++ H ++++c+a+  d   +l+sgSrD+ ik Wd   
   mKIAA0449    28    GPTHNFepPHYDGIECLAIQGD---ILFSGSRDNGIKKWD    64   

WD40: domain 2 of 3, from 70 to 107: score 34.6, E = 2.3e-06
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                        +++ ++H+++V+++af+p  +p+l+s++r g ik+W+   
   mKIAA0449    70    LIQQIPnAHKDWVCALAFVPG-RPMLLSACRAGFIKVWN    107  

WD40: domain 3 of 3, from 112 to 147: score 34.5, E = 2.5e-06
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                      +++ +++gH sp+++++ +     +++++S+D+ +k+W+   
   mKIAA0449   112    TPIGEIkGHDSPINAICTNSK---HIFTASSDCRVKLWN    147  

//