hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mia/mia37011/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0446  ( 339 res)   mia37011

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
Mito_carr Mitochondrial carrier protein                 201.5    1.3e-56   3

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
Mito_carr   1/3      44   130 ..     1   100 []    74.1    3e-18
Mito_carr   2/3     133   240 ..     1   100 []    65.8    9e-16
Mito_carr   3/3     246   332 ..     1   100 []    66.7  4.8e-16

Alignments of top-scoring domains:
Mito_carr: domain 1 of 3, from 44 to 130: score 74.1, E = 3e-18
                   *->sflksllaGgiAGaiaatvtyPlDvvKtRLQstqgadassaaggssk
                      +f++    G +  ++ ++ +yP+ +++tRLQ          ++g+s 
   mKIAA0446    44    KFYV---FGVAMTMMIRVSVYPFTLIRTRLQ---------VQKGKSL 78   

                   YkgildcfkkiykeEGirgLYkGlgpnllrvaPyaaiyFgtYEtlKklll
                   Y+g++d+f+ki++ +G++gLY+G+++n +   +++ +y +tYE ++k+  
   mKIAA0446    79 YHGTFDAFVKILRADGVAGLYRGFLVNTF-TLISGQCYVTTYELTRKFVA 127  

                   kkl<-*
                   +++   
   mKIAA0446   128 DYS    130  

Mito_carr: domain 2 of 3, from 133 to 240: score 65.8, E = 9e-16
                   *->sflksllaGgiAGaiaatvtyPlDvvKtRLQ........stqgadas
                      +++ksl+aGg A ++a+++t P+Dvv   L+ ++++++  + +   +
   mKIAA0446   133    NTVKSLVAGGSASLVAQSITVPIDVVSQHLMmqrkgekmGRFQVHGN 179  

                   saaggsskYkgildcfkkiykeEGirgLYkGlgpnllrvaPyaaiyFgtY
                     ++g   +  + d +++i++ +G+rg+Y+G++++ll ++P++a+++ +Y
   mKIAA0446   180 LEGQGVIAFGQTKDIIRQILRADGLRGFYRGYVASLLTYIPNSAVWWPFY 229  

                   EtlKklllkkl<-*
                    ++ + l++     
   mKIAA0446   230 HFYAEQLSRLC    240  

Mito_carr: domain 3 of 3, from 246 to 332: score 66.7, E = 4.8e-16
                   *->sflksllaGgiAGaiaatvtyPlDvvKtRLQstqgadassaaggssk
                      +++  +++G +A+a+a+++t+P+Dv++tR Q                
   mKIAA0446   246    HIVFQAISGPLAAATASILTNPMDVIRTRVQ-------------VEG 279  

                   YkgildcfkkiykeEGirgLYkGlgpnllrvaPyaaiyFgtYEtlKklll
                    ++i+ +f+++++eEG+ gL kGl+++++ + P++ +  ++YE+lKkl l
   mKIAA0446   280 KSSIVLTFRQLMAEEGPWGLMKGLSARIISATPSTIVIVVGYESLKKLSL 329  

                   kkl<-*
                   + +   
   mKIAA0446   330 RPE    332  

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