hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg07064/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0444  ( 702 res)   mbg07064

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
CHDCT2   CHDCT2 (NUC038) domain                         446.9   1.8e-130   1
DUF1086  Domain of Unknown Function (DUF1086)           306.3    3.8e-88   1
DUF1087  Domain of Unknown Function (DUF1087)           100.0    4.7e-26   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
DUF1087    1/1      53   117 ..     1    67 []   100.0  4.7e-26
DUF1086    1/1     130   289 ..     1   168 []   306.3  3.8e-88
CHDCT2     1/1     484   657 ..     1   180 []   446.9 1.8e-130

Alignments of top-scoring domains:
DUF1087: domain 1 of 1, from 53 to 117: score 100.0, E = 4.7e-26
                   *->leqllkecElaitesiilakenaepsYWekLLrasyEkqQeeelsqL
                       ++++   E++++e+i+++ en +p+YWekLLr++yE+qQe+++++L
   mKIAA0444    53    VREEDGV-EEVEREVIKQE-ENVDPDYWEKLLRHHYEQQQEDLARNL 97   

                   GKRKRsRKQViYtEgttvee<-*
                   GK+KR+RKQV+Y++ ++++    
   mKIAA0444    98 GKGKRIRKQVNYNDASQEDQ    117  

DUF1086: domain 1 of 1, from 130 to 289: score 306.3, E = 3.8e-88
                   *->peaargLeeddeDyqrkp..rTvtRPYRkraRdnseekliPLmegeG
                      ++ ++  e++deD++++p+++ ++R  R+    +++++l+PL++++G
   mKIAA0444   130    YSIGS--EDEDEDFEERPegQSGRRQSRRQLKSDRDKPLPPLLARVG 174  

                   ryleVLGFNetqRdiFlrtvMRyGmPPQdnfdskwlVrdLrnKsekefkr
                   +++eVLGFN++qR++Fl+++MR+GmPPQd+f+s wlVrdLr+Ksekef++
   mKIAA0444   175 GNIEVLGFNARQRKAFLNAIMRWGMPPQDAFNSHWLVRDLRGKSEKEFRA 224  

                   YgiLFLkHiaEnptDNsttFKVITAmVYaDGVPkEGlssdevLvritlmm
                   Y++LF++H++E+++D+++tF        aDGVP+EGls+++vL+ri++m+
   mKIAA0444   225 YVSLFMRHLCEPGADGAETF--------ADGVPREGLSRQHVLTRIGVMS 266  

                   LVkeKvqflenhpgaPvfpeyvi<-*
                   LV++Kvq++e+++g+ + p++v    
   mKIAA0444   267 LVRKKVQEFEHVNGKYSTPDLVP    289  

CHDCT2: domain 1 of 1, from 484 to 657: score 446.9, E = 1.8e-130
                   *->GkEYEIWhRRHDYWLLAgvvvhGYGRyQiNFqDIiNDprFsivNEPF
                      Gk YEIWhRRHDYWLLAg+v+hGY R+Q    DI+NDpr+ i+NEPF
   mKIAA0444   484    GKIYEIWHRRHDYWLLAGIVTHGYARWQ----DIQNDPRYMILNEPF 526  

                   KevgaePaanfadiKnKFLaRRFKLlEQsLVIEEQLRRAAhlNkaqdPdq
                   K    +  +n+++ KnKFLaRRFKLlEQ+LVIEEQLRRAA+lN  qdP +
   mKIAA0444   527 KSEIHK--GNYLEMKNKFLARRFKLLEQALVIEEQLRRAAYLNMTQDPNH 574  

                   PvgsLaqrFaelEnlAeshaniakESsaGNrnANAvLHKvLaQLdelLSD
                   P++ L++r ae+E+lAesh++++kES+aGN++ANAvLHKvL+QL+elLSD
   mKIAA0444   575 PAMALNARLAEVECLAESHQHLSKESLAGNKPANAVLHKVLNQLEELLSD 624  

                   mKsDVsRLPaTlaqvapVteRLqMsERqILSRL<-*
                   mK+DV RLP+ l++++pV+ RLqMsER+ILSRL   
   mKIAA0444   625 MKADVTRLPSMLSRIPPVAARLQMSERSILSRL    657  

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