hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbg/mbg01420/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0443 ( 1350 res) mbg01420 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- DUF634 Protein of unknown function (DUF634) 148.1 1.6e-40 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- DUF634 1/1 1084 1345 .. 1 264 [] 148.1 1.6e-40 Alignments of top-scoring domains: DUF634: domain 1 of 1, from 1084 to 1345: score 148.1, E = 1.6e-40 *->rrpspskkfafPysiDdiL..saeeLqKlLaLLesTeDPfIheiAli +r s+ ++ +++ i + L+ ++ee++ lL L + DPfIhei i mKIAA0443 1084 ARESAQPENWSCNCIQCELriGSEEFEELLLLMDRNRDPFIHEISKI 1130 tLGNnAAYsfNQeiIReLGgvpIIanlintpdpiikeKALiaLNNlSvns ++G A f++++IR G+v +I+ l+n p+ ++ L + + mKIAA0443 1131 AMGMRGASQFTRDFIRNSGVVSLIEALLNYPSSRVRTRFLENMVRMAPPY 1180 EnQrkikvYinqVCdDtisspLNSaVQlAGLkLLTnmTvtNdyQHlLans i++Y+ q+C+Dt+ L+S+ Ql+GL++ T++T t dy+ +++n+ mKIAA0443 1181 PDLNMIETYVCQICEDTFDYDLDSPDQLSGLTMITHLTATSDYHKVVVNY 1230 isdfFrLLskGNgkTKvqVLKLLlNLsENPAmTReLlsakVpSSLlSLFN ++fF LL++GN kT++ VLKLLlNLsEN mT+ Ll + S++ L N mKIAA0443 1231 LAGFFYLLNSGNTKTRFHVLKLLLNLSENLVMTKRLLVTDSVSEFMDLIN 1280 kkeakEiLLniLtlFeNIndnlKtEgklftqeeFtkGS.......Lffll +e+ E++ +L++Fe I ++ E++ + + ++ + ++ ++ + mKIAA0443 1281 REESDENIQIVLAIFETISKHIQKEALFSDDDDDDEEEdavnlepFISAF 1330 kesgvCaqKlrALasHhDleVKvKVi<-* e++ +a e K K + mKIAA0443 1331 REAE-------KIAK----ELKRKPG 1345 //