hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbp/mbp07087/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0441  ( 699 res)   mbp07087

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
ZnF_C2H2 zinc finger                                    159.0    4.8e-43   8
BTB      Broad-Complex, Tramtrack and Bric a brac       101.4      1e-25   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
BTB        1/1      46   142 ..     1   114 []   101.4    1e-25
ZnF_C2H2   1/8     302   324 ..     1    23 []    17.5      1.9
ZnF_C2H2   2/8     330   352 ..     1    23 []    28.3   0.0011
ZnF_C2H2   3/8     358   380 ..     1    23 []    27.8   0.0015
ZnF_C2H2   4/8     386   408 ..     1    23 []    29.0  0.00067
ZnF_C2H2   5/8     414   436 ..     1    23 []    20.6     0.21
ZnF_C2H2   6/8     442   464 ..     1    23 []    32.2  7.3e-05
ZnF_C2H2   7/8     470   492 ..     1    23 []    22.6    0.053
ZnF_C2H2   8/8     498   520 ..     1    23 []    27.6   0.0018

Alignments of top-scoring domains:
BTB: domain 1 of 1, from 46 to 142: score 101.4, E = 1e-25
                   *->cDvtlvvggdlggdnaegkkfhasqHkavLaacrrdSpyFkalfes.
                      cD+tl+v++         ++f+a  Hka+Laa+   S+yF  +f ++
   mKIAA0441    46    CDITLIVEN---------VHFRA--HKALLAAS---SEYFSMMFAEe 78   

                   .......ieldDeallievspeaFralLnflYt.kldlpeedvenveelL
                   ++ +++ + l++      + +++F++lL+f+Yt+ l+ +e+   + e++L
   mKIAA0441    79 geigqsiYMLEG------MVADTFGILLEFIYTgYLHASEK---TTEQIL 119  

                   elAdfldSYGqip.lvelCeefllknl<-*
                   ++A+fl    ++ +lv++  +f ++++   
   mKIAA0441   120 ATAQFL----KVYdLVKAYADFQDNHS    142  

ZnF_C2H2: domain 1 of 8, from 302 to 324: score 17.5, E = 1.9
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                       +C+  C+++f+  + L  H+r+H   
   mKIAA0441   302    ARCKD-CDRVFKYShFLAIHQRRH    324  

ZnF_C2H2: domain 2 of 8, from 330 to 352: score 28.3, E = 0.0011
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      +kC++ Cgk f +k++L+ H r+H   
   mKIAA0441   330    FKCNE-CGKGFAQKhSLQVHTRMH    352  

ZnF_C2H2: domain 3 of 8, from 358 to 380: score 27.8, E = 0.0015
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgk  ++k++L +Hm  H   
   mKIAA0441   358    YTCTV-CGKALTTKhSLLEHMSLH    380  

ZnF_C2H2: domain 4 of 8, from 386 to 408: score 29.0, E = 0.00067
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++C++ Cgk fs+k++Lk H+rvH   
   mKIAA0441   386    FTCDQ-CGKYFSQKrQLKSHYRVH    408  

ZnF_C2H2: domain 5 of 8, from 414 to 436: score 20.6, E = 0.21
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                       +C++ C+++f + ++Lk+H+r+H   
   mKIAA0441   414    PECSH-CHRKFMDVsQLKKHLRTH    436  

ZnF_C2H2: domain 6 of 8, from 442 to 464: score 32.2, E = 7.3e-05
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++C+i Cgksf+ k++L+ H+r+H   
   mKIAA0441   442    FTCEI-CGKSFTAKsSLQTHIRIH    464  

ZnF_C2H2: domain 7 of 8, from 470 to 492: score 22.6, E = 0.053
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y C+i Cgk+fs+ +a +rH   H   
   mKIAA0441   470    YSCSI-CGKCFSDSsAKRRHCILH    492  

ZnF_C2H2: domain 8 of 8, from 498 to 520: score 27.6, E = 0.0018
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      + Cp+ Cg +f + ++Lk H+++H   
   mKIAA0441   498    FSCPE-CGLQFARLdNLKAHLKIH    520  

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