hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbp/mbp07087/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0441  ( 699 res)   mbp07087

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
zf-C2H2  Zinc finger, C2H2 type                         180.2    3.5e-50   8
BTB      BTB/POZ domain                                 137.0    3.5e-37   1
AT_hook  AT hook motif                                   17.9       0.12   1
zf-BED   BED zinc finger                                  5.0        0.9   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
BTB        1/1      36   142 ..     1   135 []   137.0  3.5e-37
AT_hook    1/1     168   180 ..     1    13 []    17.9     0.12
zf-C2H2    1/8     302   324 ..     1    24 []    22.3    0.011
zf-C2H2    2/8     330   352 ..     1    24 []    32.1  1.3e-05
zf-C2H2    3/8     358   380 ..     1    24 []    27.8  0.00026
zf-C2H2    4/8     386   408 ..     1    24 []    31.6  1.9e-05
zf-C2H2    5/8     414   436 ..     1    24 []    18.7     0.13
zf-C2H2    6/8     442   464 ..     1    24 []    37.3  3.5e-07
zf-BED     1/1     427   465 ..     1    52 []     5.0      0.9
zf-C2H2    7/8     470   492 ..     1    24 []    24.8    0.002
zf-C2H2    8/8     498   520 ..     1    24 []    33.5  4.8e-06

Alignments of top-scoring domains:
BTB: domain 1 of 1, from 36 to 142: score 137.0, E = 3.5e-37
                   *->lnelreqgelcDVtLvvgdgsgrydvgkkfkAHKavLaacSpYFkal
                      l+++r++g+lcD+tL v++        ++f+AHKa Laa+S+YF ++
   mKIAA0441    36    LEDQRKKGFLCDITLIVEN--------VHFRAHKALLAASSEYFSMM 74   

                   FtgqfkesiteeessvsseieledvspedfealLefiYtgelsitqdqks
                   F           e+ +s +++le++ +++f++lLefiYtg l  +     
   mKIAA0441    75 FAEE-------GEIGQS-IYMLEGMVADTFGILLEFIYTGYLHAS----- 111  

                   PssckseenvedlLalAadllqipslvdkCeefliksl<-*
                         e++ e++La+A ++l++++lv+++ +f ++++   
   mKIAA0441   112 ------EKTTEQILATA-QFLKVYDLVKAYADFQDNHS    142  

AT_hook: domain 1 of 1, from 168 to 180: score 17.9, E = 0.12
                   *->kRkRGRPrKaata<-*
                      kRkRGRPrKa++    
   mKIAA0441   168    KRKRGRPRKANGL    180  

zf-C2H2: domain 1 of 8, from 302 to 324: score 22.3, E = 0.011
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                       +C+ dC+++F+ ++ L  H+r+H   
   mKIAA0441   302    ARCK-DCDRVFKYSHFLAIHQRRH    324  

zf-C2H2: domain 2 of 8, from 330 to 352: score 32.1, E = 1.3e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      +kC+ +Cgk F +k++L+ H r+H   
   mKIAA0441   330    FKCN-ECGKGFAQKHSLQVHTRMH    352  

zf-C2H2: domain 3 of 8, from 358 to 380: score 27.8, E = 0.00026
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C+ +Cgk+ ++k++L  H+  H   
   mKIAA0441   358    YTCT-VCGKALTTKHSLLEHMSLH    380  

zf-C2H2: domain 4 of 8, from 386 to 408: score 31.6, E = 1.9e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ++C+ +Cgk Fs+k +Lk+H r+H   
   mKIAA0441   386    FTCD-QCGKYFSQKRQLKSHYRVH    408  

zf-C2H2: domain 5 of 8, from 414 to 436: score 18.7, E = 0.13
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                       +C+ +C+++F + s+Lk+HlrtH   
   mKIAA0441   414    PECS-HCHRKFMDVSQLKKHLRTH    436  

zf-C2H2: domain 6 of 8, from 442 to 464: score 37.3, E = 3.5e-07
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ++C+ +CgksF+ ks+L++H+r+H   
   mKIAA0441   442    FTCE-ICGKSFTAKSSLQTHIRIH    464  

zf-BED: domain 1 of 1, from 427 to 465: score 5.0, E = 0.9
                   *->SkvWkhFtkveeeedgkevegkakCkhCgkklsrkkksGTsnLirHL
                      S + kh +   + e+        +C +Cgk ++ k     s+L +H+
   mKIAA0441   427    SQLKKHLRTH-TGEKP------FTCEICGKSFTAK-----SSLQTHI 461  

                   rrkHp<-*
                   r +H+   
   mKIAA0441   462 R-IHR    465  

zf-C2H2: domain 7 of 8, from 470 to 492: score 24.8, E = 0.002
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C+ +Cgk+Fs++s  +rH   H   
   mKIAA0441   470    YSCS-ICGKCFSDSSAKRRHCILH    492  

zf-C2H2: domain 8 of 8, from 498 to 520: score 33.5, E = 4.8e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ++Cp +Cg  F r +nLk+Hl++H   
   mKIAA0441   498    FSCP-ECGLQFARLDNLKAHLKIH    520  

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