hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg05561/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0440  ( 1510 res)   mbg05561

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PDZ      Domain present in PSD-95, Dlg, and ZO-1/2.      45.7    6.3e-09   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PDZ        1/1     690   756 ..     1    80 []    45.7  6.3e-09

Alignments of top-scoring domains:
PDZ: domain 1 of 1, from 690 to 756: score 45.7, E = 6.3e-09
                   *->gglGfsivggifvssvvpGspAakaGrkslglLkvGDvIleVNGets
                      g+lGf +    +v++v+p + A++aG      L+ G +++e+   + 
   mKIAA0440   690    GQLGFHVNYEGIVADVEPYGYAWQAG------LRQGSRLVEICK-VA 729  

                   vegltheeavdllkkaggggvGekvtLtvlRgg<-*
                   v +l+he+ +dll+ +       +v+++++++    
   mKIAA0440   730 VATLSHEQMIDLLRTSV------TVKVVIIPPH    756  

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