hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg05561/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0440  ( 1510 res)   mbg05561

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Rap_GAP  Rap/ran-GAP                                    459.4   3.1e-134   1
PDZ      PDZ domain (Also known as DHR or GLGF)          27.9    0.00024   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Rap_GAP    1/1     356   544 ..     1   192 []   459.4 3.1e-134
PDZ        1/1     681   753 ..     1    82 []    27.9  0.00024

Alignments of top-scoring domains:
Rap_GAP: domain 1 of 1, from 356 to 544: score 459.4, E = 3.1e-134
                   *->lysNeeaspaFdeFLtlLGqrvrLKdfepDkvYrGGLDvkgddTGth
                      +y+Ne+a+paF+eFL+lLG+rvrLK+fe+   Yr++LD+k+d+TGth
   mKIAA0440   356    MYNNESAGPAFEEFLQLLGERVRLKGFEK---YRAQLDTKTDSTGTH 399  

                   svYttykdmeimFHVSTlLPytesdkqqLqrKRHIGNDiVtIVFqesGek
                   s+Yttykd+eimFHVST+LPyt+++kqqL+rKRHIGNDiVtIVFqe+G++
   mKIAA0440   400 SLYTTYKDYEIMFHVSTMLPYTPNNKQQLLRKRHIGNDIVTIVFQEPGAQ 449  

                   pFspdtIrShFqhVfviVraldpetehvtYkVsvtrrkDvpafgptlpkg
                   pFsp++IrShFqhVfviVra++p+te+v+Y+V+vtr++Dvp+fgp++pkg
   mKIAA0440   450 PFSPKNIRSHFQHVFVIVRAHNPCTESVCYSVAVTRSRDVPSFGPPIPKG 499  

                   avfdknaeFreflLakliNaenavhkarkFaklatrtRqklLadL<-*
                   ++f+k+++Fr+flLak+iNaena+hk++kF+++atrtRq++L+dL   
   mKIAA0440   500 VTFPKSNVFRDFLLAKVINAENAAHKSEKFRAMATRTRQEYLKDL    544  

PDZ: domain 1 of 1, from 681 to 753: score 27.9, E = 0.00024
                   *->evtlekevkrgglGfsikggsdkgivvsevlpGsgaAeagGrLkeGD
                      e+tl ++ + g lGf +      + +v++v p  g A ++G L+ G 
   mKIAA0440   681    EMTLRRN-GLGQLGFHVNY----EGIVADVEPY-GYAWQAG-LRQGS 720  

                   qIlsvNGqdvenlsheravlalkgsggsevtLtil<-*
                   ++++++ + v+ lshe+ +++l+ s+  +v+++i+   
   mKIAA0440   721 RLVEICKVAVATLSHEQMIDLLRTSV--TVKVVII    753  

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