hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbg/mbg08890/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0439 ( 442 res) mbg08890 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- C2 C2 domain 68.0 1.9e-16 1 WW WW domain 59.7 6.5e-14 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- C2 1/1 8 87 .. 1 88 [] 68.0 1.9e-16 WW 1/1 173 202 .. 1 30 [] 59.7 6.5e-14 Alignments of top-scoring domains: C2: domain 1 of 1, from 8 to 87: score 68.0, E = 1.9e-16 *->LrVtvieAknLppkDfkngksDPYVkvslggdkkdqk....kkTkvi L + + g +DPYVk+sl + +++ +Tk+i mKIAA0439 8 --------SLLEEVF-LPGICDPYVKLSLYVADE-NRelalVQTKTI 44 kktlNPvWNEtFtFevpppdlqetLeieVyDydrfgrddflGevs<-* kktlNP+WNE+F+F + p+ ++ L +eV+D++r++rddflG+v mKIAA0439 45 KKTLNPKWNEEFYFR-VNPSNHR-LLFEVFDENRLTRDDFLGQVD 87 WW: domain 1 of 1, from 173 to 202: score 59.7, E = 6.5e-14 *->LppgWeerkdpdGrpYYyNhnTktTqWekP<-* LppgWee d Gr+YY+Nhn++ TqW +P mKIAA0439 173 LPPGWEEKVDNLGRTYYVNHNNRSTQWHRP 202 //