hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg06146/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0438  ( 711 res)   mbg06146

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
RING     Ring finger                                     35.0    9.9e-06   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
RING       1/1     637   677 ..     1    23 []    35.0  9.9e-06

Alignments of top-scoring domains:
RING: domain 1 of 1, from 637 to 677: score 35.0, E = 9.9e-06
                   *->CpICle.......pvvlpCgH.FCr.Ci.........CPlC<-*
                      CpIC+++  +++ ++ lpC+H F+++C++ + +++++CP+C   
   mKIAA0438   637    CPICCSeyikddiATELPCHHfFHKpCVsiwlqksgtCPVC    677  

//