hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpf/mpf00778/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0437  ( 1407 res)   mpf00778

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
AT_hook  AT hook motif                                   25.2     0.0015   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
AT_hook    1/4     421   433 ..     1    13 []    16.7      0.2
AT_hook    2/4     561   573 ..     1    13 []    -1.8  3.1e+02
AT_hook    3/4     853   865 ..     1    13 []    18.5    0.098
AT_hook    4/4    1286  1298 ..     1    13 []    15.1     0.38

Alignments of top-scoring domains:
AT_hook: domain 1 of 4, from 421 to 433: score 16.7, E = 0.2
                   *->kRkRGRPrKaata<-*
                      k+kRGRP+K++     
   mKIAA0437   421    KKKRGRPKKQPLL    433  

AT_hook: domain 2 of 4, from 561 to 573: score -1.8, E = 3.1e+02
                   *->kRkRGRPrKaata<-*
                      ++kRGR + +  +   
   mKIAA0437   561    GKKRGRKPRTELP    573  

AT_hook: domain 3 of 4, from 853 to 865: score 18.5, E = 0.098
                   *->kRkRGRPrKaata<-*
                      k+kRGRP+K++++   
   mKIAA0437   853    KKKRGRPAKTNDT    865  

AT_hook: domain 4 of 4, from 1286 to 1298: score 15.1, E = 0.38
                   *->kRkRGRPrKaata<-*
                      k++RGRPrK++++   
   mKIAA0437  1286    KKRRGRPRKQPSQ    1298 

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