hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpj/mpj02793/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0436  ( 484 res)   mpj02793

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N 
--------     -----------                                -----    ------- ---
Peptidase_S9 Prolyl oligopeptidase family                94.5    2.1e-24   1

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
Peptidase_S9   1/1     245   470 ..     1   229 []    94.5  2.1e-24

Alignments of top-scoring domains:
Peptidase_S9: domain 1 of 1, from 245 to 470: score 94.5, E = 2.1e-24
                   *->psfsvwnlqlladrGyvvavaniRGsggyGrawhdagkrdlgqnefd
                       +f+  +  +l+d G + a++++RG+g+ G +wh +g++ ++ n + 
   mKIAA0436   245    MNFR-PEKRVLVDDGWILAYCHVRGGGELGLQWHADGRLTKKLNGLA 290  

                   DfiaaaeyLieqgpyvDpdrlaiwGgSyGGyltgaalnkqrpdlFkaava
                   D++a+++ L +qg +  p+       S+GG l+ga  n  +p+l +a+  
   mKIAA0436   291 DLVACIKTLHSQG-FSQPSLTTLSAFSAGGVLVGALCN-SKPELLRAVTL 338  

                   vvpvvDwltymsdtslpysfteaeymewgnpwdeneegYrylspyspydn
                   ++p++D+l++m+dt+lp  +t  e +ewgnp   +e++  y++ y p +n
   mKIAA0436   339 EAPFLDVLNTMLDTTLP--LTLEELEEWGNPSS-DEKHKNYIKRYCPCQN 385  

                   vkaqaypplLlihGlhDdRVpyqealklvaaLq...........alktGk
                   +k+q yp++ ++  ++D RVp+     +  +L++   +++++ ++ ++  
   mKIAA0436   386 IKPQHYPSVHITAYENDERVPLKGIVNYTEKLKeavaehtkgagEGYQPP 435  

                   npflllifpdeGHdLSgggkprnkrlkeyarllaFllkvlggt<-*
                   n + l i p+ +H    +   +++  k + +++ Fl + lg++   
   mKIAA0436   436 N-IILDIQPGGNH----VI--EDSH-KKITTQMKFLYEELGLD    470  

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