hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mid/mid08083/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0432 ( 832 res) mid08083 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding d 111.5 9.5e-29 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SANT 1/2 37 86 .. 1 53 [] 65.3 7.7e-15 SANT 2/2 89 136 .. 1 53 [] 51.5 1.1e-10 Alignments of top-scoring domains: SANT: domain 1 of 2, from 37 to 86: score 65.3, E = 7.7e-15 *->kkgeWteeEdelLleavkkyGkgtdndWakIakelpgRtpkqcrerw k+g W Ede+L++av kyGk n+W++Ia+ l +++kqc+ rw mKIAA0432 37 KGGVWRNTEDEILKAAVMKYGK---NQWSRIASLLHRKSAKQCKARW 80 rnllkp<-* +++l+p mKIAA0432 81 YEWLDP 86 SANT: domain 2 of 2, from 89 to 136: score 51.5, E = 1.1e-10 *->kkgeWteeEdelLleavkkyGkgtdndWakIakelpgRtpkqcrerw kk+eW+ eE+e+Ll++ k+++ +W+ Ia ++ Rt+ qc e++ mKIAA0432 89 KKTEWSREEEEKLLHLAKLMP----TQWRTIAPIIG-RTAAQCLEHY 130 rnllkp<-* ll++ mKIAA0432 131 EFLLDK 136 //