hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg07891/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0431  ( 790 res)   mbg07891

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
ZnF_C2H2 zinc finger                                     27.9     0.0014   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
ZnF_C2H2   1/4      52    77 ..     1    23 []    19.2     0.56
ZnF_C2H2   2/4      99   128 ..     1    23 []    13.0       11
ZnF_C2H2   3/4     133   153 ..     1    23 []     6.0       67
ZnF_C2H2   4/4     159   182 ..     1    23 []     2.7  1.6e+02

Alignments of top-scoring domains:
ZnF_C2H2: domain 1 of 4, from 52 to 77: score 19.2, E = 0.56
                   *->ykCpi.gCgksfssk.aLkrHmr.vH<-*
                        C+++gCgk  ++ +aL+ H+ ++H   
   mKIAA0431    52    ILCTVrGCGKILPNSpALNMHLVkSH    77   

ZnF_C2H2: domain 2 of 4, from 99 to 128: score 13.0, E = 11
                   *->ykCpi.gCg....ksfssk.aLkrHmr.vH<-*
                      y Cpi+gC++++++ fs+ +  k+H +++H   
   mKIAA0431    99    YCCPIkGCPrgpdRPFSQFsLVKQHFMkMH    128  

ZnF_C2H2: domain 3 of 4, from 133 to 153: score 6.0, E = 67
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      +kC++ C+ s+ ++ +LkrH       
   mKIAA0431   133    HKCSK-CSNSYGTEwDLKRHEE--    153  

ZnF_C2H2: domain 4 of 4, from 159 to 182: score 2.7, E = 1.6e+02
                   *->ykCpigCgksfssk.aLkrHmr..vH<-*
                      ++C+ gC++   s++aL+ H++++ H   
   mKIAA0431   159    FQCTCGCPYA--SRtALQSHIYrtGH    182  

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