hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg10379/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0430  ( 694 res)   mbg10379

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
DUF537   Protein of unknown function, DUF537             64.5    2.3e-15   1
RRM_1    RNA recognition motif. (a.k.a. RRM, RBD, or      3.0        0.5   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
DUF537     1/1     329   433 ..     1   166 []    64.5  2.3e-15
RRM_1      1/1     451   517 ..     1    74 []     3.0      0.5

Alignments of top-scoring domains:
DUF537: domain 1 of 1, from 329 to 433: score 64.5, E = 2.3e-15
                   *->aktsVfWDiedCPvPdGldarrVapnIksALeklGYrGcpV.sItAY
                      ++++VfWDie+C vP+G++a++V+++I++++++    G++   ++++
   mKIAA0430   329    PPIGVFWDIENCSVPSGRSATTVVQRIREKFFR----GHREaEFICV 371  

                   GdlnkinPreilralsstGIsLDkhvPlagevtakdkyardkkmlvdill
                   +d +k n+ e++++l++      + v+                       
   mKIAA0430   372 CDISKENK-EVIQELNNS-----ADVN----------------------- 392  

                   WaldnppPanlmLISgDivdrdfasalhdlkrkrgYniLLAepekasekl
                                         fa  l+dl++++g++i+L+++++ase+l
   mKIAA0430   393 ----------------------FALELSDLRHRHGFHIILVHKNQASEAL 420  

                   sssplllaeastqeWlWesL<-*
                   +++ ++l++       +e++   
   mKIAA0430   421 LHHANQLIR-------FEEF    433  

RRM_1: domain 1 of 1, from 451 to 517: score 3.0, E = 0.5
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      l+V NLp + + + +    +   +    k+          +   a  
   mKIAA0430   451    LYVYNLPANKDGKSISNRLRRLSDNCGGKVLSI-------TGCSAIL 490  

                   eFedeedAekAldalnGkelggrelrv<-*
                   +F ++++Ae+A + + +  + g+++ v   
   mKIAA0430   491 RFINQDSAERAQKRMENEDVFGNRIIV    517  

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