hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg00095/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0428  ( 384 res)   mbg00095

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
ZnF_C3H1 zinc finger                                     88.2    9.9e-22   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
ZnF_C3H1   1/4      17    43 ..     1    31 []    26.0   0.0052
ZnF_C3H1   2/4      50    75 ..     1    31 []    20.2     0.29
ZnF_C3H1   3/4     181   208 ..     1    31 []    36.4  3.7e-06
ZnF_C3H1   4/4     218   242 ..     1    31 []    22.5     0.06

Alignments of top-scoring domains:
ZnF_C3H1: domain 1 of 4, from 17 to 43: score 26.0, E = 0.0052
                   *->kyktelCkfFarrGppgyCpyGd.rCkfaHpl<-*
                       +  e+C+ F +rG   +C++ d++CkfaHp    
   mKIAA0428    17    LTL-EVCREF-QRG---TCSRPDtECKFAHPS    43   

ZnF_C3H1: domain 2 of 4, from 50 to 75: score 20.2, E = 0.29
                   *->kyktelCkfFarrGppgyCpyGdrCkfaHpl<-*
                      + +  +C +  ++G   +C++  +Ck++Hp+   
   mKIAA0428    50    NGRVIACFDS-LKG---RCSRE-NCKYLHPP    75   

ZnF_C3H1: domain 3 of 4, from 181 to 208: score 36.4, E = 3.7e-06
                   *->kyktelCkfFarrGppgyCpyGd.rCkfaHpl<-*
                      +++ e+C+ + +rG   +C++G+++C+faHp    
   mKIAA0428   181    TDRLEVCREY-QRG---NCNRGEnDCRFAHPA    208  

ZnF_C3H1: domain 4 of 4, from 218 to 242: score 22.5, E = 0.06
                   *->kyktelCkfFarrGppgyCpyGdrCkfaHpl<-*
                      ++  ++C+++  +G   +C++  +Ck+ Hp+   
   mKIAA0428   218    NTV-TVCMDY-IKG---RCSRE-KCKYFHPP    242  

//