hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbg/mbg00095/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0428 ( 384 res) mbg00095 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (and simil 36.4 6.5e-07 4 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- zf-CCCH 1/4 17 43 .. 1 27 [] 14.7 0.1 zf-CCCH 2/4 51 75 .. 1 27 [] 2.7 3.8 zf-CCCH 3/4 182 208 .. 1 27 [] 23.6 0.0047 zf-CCCH 4/4 218 242 .. 1 27 [] 11.4 0.27 Alignments of top-scoring domains: zf-CCCH: domain 1 of 4, from 17 to 43: score 14.7, E = 0.1 *->yktelCrffsrtGtCkyGdr.CkFaHge<-* e Cr f+r GtC++ d++CkFaH+ mKIAA0428 17 LTLEVCREFQR-GTCSRPDTeCKFAHPS 43 zf-CCCH: domain 2 of 4, from 51 to 75: score 2.7, E = 3.8 *->yktelCrffsrtGtCkyGdrCkFaHge<-* + C + ++ G+C++ ++Ck+ H++ mKIAA0428 51 GRVIACFDSLK-GRCSR-ENCKYLHPP 75 zf-CCCH: domain 3 of 4, from 182 to 208: score 23.6, E = 0.0047 *->yktelCrffsrtGtCkyGdr.CkFaHge<-* + e Cr ++r G C++G+++C+FaH+ mKIAA0428 182 DRLEVCREYQR-GNCNRGENdCRFAHPA 208 zf-CCCH: domain 4 of 4, from 218 to 242: score 11.4, E = 0.27 *->yktelCrffsrtGtCkyGdrCkFaHge<-* C+++ + G+C++ ++Ck+ H++ mKIAA0428 218 NTVTVCMDYIK-GRCSR-EKCKYFHPP 242 //