hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mic/mic03091/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0427  ( 267 res)   mic03091

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
MIF4G    Middle domain of eukaryotic initiation facto   131.1    1.2e-34   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
MIF4G      1/1      45   246 ..     1   227 []   131.1  1.2e-34

Alignments of top-scoring domains:
MIF4G: domain 1 of 1, from 45 to 246: score 131.1, E = 1.2e-34
                   *->ekkvnglinkLs..pdnfeslikellklnndlleeeDPnendkellk
                       + +n+++n+ s+ +++++s ++e  +  n++           e+l 
   mKIAA0427    45    MEILNSMRNNSSdvDAKLTSFMEEAQNSTNSE-----------EMLG 80   

                   elielifekaveepglqDklnfipayArLcalLnaknp...dFgsllldr
                   e++++i++kav+        +f+ + A+Lc ++++++ +++ F+slll++
   mKIAA0427    81 EIVRTIYQKAVSDR------SFAFTAAKLCDKMALFMVegtKFRSLLLNM 124  

                   lqeeFekrkddeekeklepkQvicdaeeeeleeleeeeeknrkrrlglvr
                   lq++F++                          +ee+++++ +r+lg+++
   mKIAA0427   125 LQKDFTV--------------------------REELQQQDVERWLGFIT 148  

                   FlgELynfqvltskiilellkelledlte..........fslecllslLe
                   Fl+E +  +  ++ + +++l + +  ++++  ++++ +++ + c+ + L+
   mKIAA0427   149 FLCEVFGTMRSSTGEPFRVLVCPIYTCLRellqsqdvkeDAVLCCSMELQ 198  

                   tcGkdLeekspklldellerlqdill...lsprlrfmledlielrknk<-
                   ++G++Lee++p+ ++ell+  +d++l +++s+ +r +l+ +iel++n   
   mKIAA0427   199 STGRLLEEQLPEMMTELLASARDKMLcpsESMLTRSLLLEVIELHANS   246  

                   *
                    
   mKIAA0427     -   -    

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