hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm11025/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0426  ( 508 res)   mpm11025

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
LER      leucine rich region                            262.2    4.2e-74   1
ZnF_C2H2 zinc finger                                    153.6      2e-41   7

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
LER        1/1      49   161 ..     1   113 []   262.2  4.2e-74
ZnF_C2H2   1/7     276   298 ..     1    23 []    24.8    0.012
ZnF_C2H2   2/7     304   326 ..     1    23 []    29.7  0.00039
ZnF_C2H2   3/7     332   354 ..     1    23 []    30.3  0.00027
ZnF_C2H2   4/7     360   382 ..     1    23 []    24.8    0.012
ZnF_C2H2   5/7     388   410 ..     1    23 []    26.2   0.0044
ZnF_C2H2   6/7     416   438 ..     1    23 []    23.4    0.032
ZnF_C2H2   7/7     462   484 ..     1    23 []    29.3  0.00054

Alignments of top-scoring domains:
LER: domain 1 of 1, from 49 to 161: score 262.2, E = 4.2e-74
                   *->pEifRqrFRqFrYqEtsGPREALSRLRELCrqWLRPElhTKEQILEL
                      +++fR++FRqF+YqEtsGPREALSRLRELCrqWLRP+l++KEQILEL
   mKIAA0426    49    RDVFRKYFRQFCYQETSGPREALSRLRELCRQWLRPDLNSKEQILEL 95   

                   LVLEQFLTILPgELQaWVrehhPeSGEEAVtLlEdLereLdepgqqVsah
                   LVLEQFLTILPgELQaWV+e++PeS EE+Vt+lEdLereLde+g + s++
   mKIAA0426    96 LVLEQFLTILPGELQAWVQEQNPESVEEVVTVLEDLERELDELGYRASVQ 145  

                   vhgqevLleemvplga<-*
                   +++q +++e++ + ++   
   mKIAA0426   146 TEEQVTFQEVKPLATE    161  

ZnF_C2H2: domain 1 of 7, from 276 to 298: score 24.8, E = 0.012
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      + C++ Cgksf++++ L++H rvH   
   mKIAA0426   276    HGCDE-CGKSFTQHsRLIEHKRVH    298  

ZnF_C2H2: domain 2 of 7, from 304 to 326: score 29.7, E = 0.00039
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykC++ Cgk+f++++ L+rH  vH   
   mKIAA0426   304    YKCEV-CGKTFRWRtVLIRHKVVH    326  

ZnF_C2H2: domain 3 of 7, from 332 to 354: score 30.3, E = 0.00027
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykC++ Cg+ f +++aL++H+r H   
   mKIAA0426   332    YKCNE-CGRAFGQWsALNQHQRLH    354  

ZnF_C2H2: domain 4 of 7, from 360 to 382: score 24.8, E = 0.012
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgk f++k  L +H+++H   
   mKIAA0426   360    YHCNE-CGKAFCQKaGLFHHLKSH    382  

ZnF_C2H2: domain 5 of 7, from 388 to 410: score 26.2, E = 0.0044
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C + C+ksf++++ L +H+ vH   
   mKIAA0426   388    YQCLQ-CNKSFNRRsTLSQHQGVH    410  

ZnF_C2H2: domain 6 of 7, from 416 to 438: score 23.4, E = 0.032
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C+  Cgk f   ++L  H+ +H   
   mKIAA0426   416    YECND-CGKAFVYNsSLATHQETH    438  

ZnF_C2H2: domain 7 of 7, from 462 to 484: score 29.3, E = 0.00054
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykC++ Cgk f +k +L++H ++H   
   mKIAA0426   462    YKCSV-CGKAFIQKiSLIEHEQIH    484  

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