hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm11025/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0426  ( 508 res)   mpm11025

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SCAN     SCAN domain                                    221.7      1e-62   1
zf-C2H2  Zinc finger, C2H2 type                         179.9      4e-50   7

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SCAN       1/1      47   142 ..     1    96 []   221.7    1e-62
zf-C2H2    1/7     276   298 ..     1    24 []    27.3  0.00036
zf-C2H2    2/7     304   326 ..     1    24 []    29.9    6e-05
zf-C2H2    3/7     332   354 ..     1    24 []    35.0  1.7e-06
zf-C2H2    4/7     360   382 ..     1    24 []    27.3  0.00035
zf-C2H2    5/7     388   410 ..     1    24 []    30.2  4.9e-05
zf-C2H2    6/7     416   438 ..     1    24 []    34.8    2e-06
zf-C2H2    7/7     462   484 ..     1    24 []    29.5  7.8e-05

Alignments of top-scoring domains:
SCAN: domain 1 of 1, from 47 to 142: score 221.7, E = 1e-62
                   *->pspEifRqrFRqfrYqetsGPrEALsrLReLChqWLrPEvhTKEQIL
                        + +fR++FRqf+YqetsGPrEALsrLReLC+qWLrP++++KEQIL
   mKIAA0426    47    YNRDVFRKYFRQFCYQETSGPREALSRLRELCRQWLRPDLNSKEQIL 93   

                   ELLVLEQFLtILPkElQawVqehhPeSgEEaVtLlEdLerelDepgqqV<
                   ELLVLEQFLtILP+ElQawVqe+ PeS EE+Vt+lEdLerelDe+g    
   mKIAA0426    94 ELLVLEQFLTILPGELQAWVQEQNPESVEEVVTVLEDLERELDELGYRA  142  

                   -*
                     
   mKIAA0426     -    -    

zf-C2H2: domain 1 of 7, from 276 to 298: score 27.3, E = 0.00036
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      + C+ +CgksF+++s L  H+r+H   
   mKIAA0426   276    HGCD-ECGKSFTQHSRLIEHKRVH    298  

zf-C2H2: domain 2 of 7, from 304 to 326: score 29.9, E = 6e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ykC+ +Cgk+F+ +  L rH+ +H   
   mKIAA0426   304    YKCE-VCGKTFRWRTVLIRHKVVH    326  

zf-C2H2: domain 3 of 7, from 332 to 354: score 35.0, E = 1.7e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ykC+ +Cg++F ++s L++H+r H   
   mKIAA0426   332    YKCN-ECGRAFGQWSALNQHQRLH    354  

zf-C2H2: domain 4 of 7, from 360 to 382: score 27.3, E = 0.00035
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y C+ +Cgk+F++k+ L +Hl++H   
   mKIAA0426   360    YHCN-ECGKAFCQKAGLFHHLKSH    382  

zf-C2H2: domain 5 of 7, from 388 to 410: score 30.2, E = 4.9e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C  +C+ksF+r+s+L +H+ +H   
   mKIAA0426   388    YQCL-QCNKSFNRRSTLSQHQGVH    410  

zf-C2H2: domain 6 of 7, from 416 to 438: score 34.8, E = 2e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C+ dCgk+F  +s+L +H+ tH   
   mKIAA0426   416    YECN-DCGKAFVYNSSLATHQETH    438  

zf-C2H2: domain 7 of 7, from 462 to 484: score 29.5, E = 7.8e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ykC+ +Cgk+F +k +L  H ++H   
   mKIAA0426   462    YKCS-VCGKAFIQKISLIEHEQIH    484  

//