hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbh/mbh03531/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0422 ( 391 res) mbh03531 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Guanylate_cyc Adenylate and Guanylate cyclase catalyt 286.4 3.6e-82 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- Guanylate_cyc 1/1 193 387 .. 1 223 [] 286.4 3.6e-82 Alignments of top-scoring domains: Guanylate_cyc: domain 1 of 1, from 193 to 387: score 286.4, E = 3.6e-82 *->vyaqrydnVtilFaDIvGFTalssrhsvNngpeevvrlLNdlytrFD +y+q+ ++V+++Fa+I++F +++ + + Nn+++e++rlLN+++++FD mKIAA0422 193 LYYQSCECVAVMFASIANFSEFYVELEANNEGVECLRLLNEIIADFD 239 eLldehkf.gvyKvKTIGDaYMvasGlppaadqtkLakklqldsaaHaak e+++e +f+ +K+KTIG++YM+asGl + +++H+ mKIAA0422 240 EIISEERFrQLEKIKTIGSTYMAASGLNAS--------TYDQVGRSHITA 281 ladfALdmveaiqevnvehanrepPtvLyrGlrvRiGiHtGpVvaGviGl lad A+ ++e ++ +n++++n + +++ iG++ GpVvaGviG mKIAA0422 282 LADYAMRLMEQMKHINEHSFN--N-------FQMKIGLNMGPVVAGVIG- 321 takrprYdvwGdTVNlASRmEStGvpgsekIhvseetyrlLkeeesfefe a++p+Yd+wG+TVN+ SRm+StGvp +I+v++ y++L +++ ++ e mKIAA0422 322 -ARKPQYDIWGNTVNVSSRMDSTGVPD--RIQVTTDLYQVLAAKG-YQLE 367 faleprgeveVkGkgkpGeietYfLkg<-* + rg v+VkGkg+ ++tYfL+g mKIAA0422 368 C----RGVVKVKGKGE---MTTYFLNG 387 //