hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file: /cdna4/rodent/full/goal/mbg/mbg05717/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: mKIAA0416 ( 528 res) mbg05717
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
LRR_TYP Leucine-rich repeats, typical (most populate 145.5 5.4e-39 9
LRR_PS Leucine-rich repeat, plant-specific subfamil 34.6 1.4e-05 6
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
LRR_PS 1/6 97 119 .. 1 24 [] 7.7 1.2e+02
LRR_TYP 1/9 97 120 .. 1 24 [] 25.8 0.006
LRR_TYP 2/9 121 144 .. 1 24 [] 23.0 0.041
LRR_PS 2/6 145 167 .. 1 24 [] 17.0 2.6
LRR_TYP 3/9 145 168 .. 1 24 [] 30.8 0.00019
LRR_PS 3/6 169 191 .. 1 24 [] 13.8 19
LRR_TYP 4/9 169 192 .. 1 24 [] 29.4 0.00048
LRR_PS 4/6 193 216 .. 1 24 [] 4.8 2.9e+02
LRR_TYP 5/9 193 216 .. 1 24 [] 18.0 1.3
LRR_TYP 6/9 217 237 .. 1 24 [] 14.5 7.1
LRR_PS 5/6 217 239 .. 1 24 [] 0.8 9.6e+02
LRR_TYP 7/9 241 264 .. 1 24 [] 6.9 59
LRR_TYP 8/9 265 288 .. 1 24 [] 2.1 2.3e+02
LRR_PS 6/6 289 311 .. 1 24 [] 5.5 2.3e+02
LRR_TYP 9/9 289 312 .. 1 24 [] 16.9 2.8
Alignments of top-scoring domains:
LRR_PS: domain 1 of 6, from 97 to 119: score 7.7, E = 1.2e+02
*->LtsLqvLdLsnNnLsGeIPsslgn<-*
+++L+ L+L +N++s ++ ++ ++
mKIAA0416 97 FSQLTWLHLDHNQIS-TVKEDAFQ 119
LRR_TYP: domain 1 of 9, from 97 to 120: score 25.8, E = 0.006
*->LpnLreLdLsnNqLtsLPpgaFqg<-*
++L+ L+L++Nq++++ ++aFqg
mKIAA0416 97 FSQLTWLHLDHNQISTVKEDAFQG 120
LRR_TYP: domain 2 of 9, from 121 to 144: score 23.0, E = 0.041
*->LpnLreLdLsnNqLtsLPpgaFqg<-*
L +L+eL Ls+N++ LP+ +F
mKIAA0416 121 LYKLKELILSSNKIFYLPNTTFTQ 144
LRR_PS: domain 2 of 6, from 145 to 167: score 17.0, E = 2.6
*->LtsLqvLdLsnNnLsGeIPsslgn<-*
L +Lq+LdLs+N+Ls ++ ++l+
mKIAA0416 145 LINLQNLDLSFNQLS-SLHPELFY 167
LRR_TYP: domain 3 of 9, from 145 to 168: score 30.8, E = 0.00019
*->LpnLreLdLsnNqLtsLPpgaFqg<-*
L nL+ LdLs+NqL+sL+p++F g
mKIAA0416 145 LINLQNLDLSFNQLSSLHPELFYG 168
LRR_PS: domain 3 of 6, from 169 to 191: score 13.8, E = 19
*->LtsLqvLdLsnNnLsGeIPsslgn<-*
L++Lq+L+L +N+L +IP l+
mKIAA0416 169 LRKLQTLHLRSNSLR-TIPVRLFW 191
LRR_TYP: domain 4 of 9, from 169 to 192: score 29.4, E = 0.00048
*->LpnLreLdLsnNqLtsLPpgaFqg<-*
L++L++L+L +N L+++P ++F++
mKIAA0416 169 LRKLQTLHLRSNSLRTIPVRLFWD 192
LRR_PS: domain 4 of 6, from 193 to 216: score 4.8, E = 2.9e+02
*->LtsLqvLdLsnNnLsGeIPsslgn<-*
++sL++LdLs N+L +
mKIAA0416 193 CRSLEFLDLSTNRLRSLARNGFAG 216
LRR_TYP: domain 5 of 9, from 193 to 216: score 18.0, E = 1.3
*->LpnLreLdLsnNqLtsLPpgaFqg<-*
++L+ LdLs N+L+sL ++ F+g
mKIAA0416 193 CRSLEFLDLSTNRLRSLARNGFAG 216
LRR_TYP: domain 6 of 9, from 217 to 237: score 14.5, E = 7.1
*->LpnLreLdLsnNqLtsLPpgaFqg<-*
L +LreL+L++NqLt + F++
mKIAA0416 217 LIKLRELHLEHNQLTKIN---FAH 237
[output cut off at A = 10 top alignments]
//