hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg05717/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0416  ( 528 res)   mbg05717

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
LRR_TYP  Leucine-rich repeats, typical (most populate   145.5    5.4e-39   9
LRR_PS   Leucine-rich repeat, plant-specific subfamil    34.6    1.4e-05   6

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
LRR_PS     1/6      97   119 ..     1    24 []     7.7  1.2e+02
LRR_TYP    1/9      97   120 ..     1    24 []    25.8    0.006
LRR_TYP    2/9     121   144 ..     1    24 []    23.0    0.041
LRR_PS     2/6     145   167 ..     1    24 []    17.0      2.6
LRR_TYP    3/9     145   168 ..     1    24 []    30.8  0.00019
LRR_PS     3/6     169   191 ..     1    24 []    13.8       19
LRR_TYP    4/9     169   192 ..     1    24 []    29.4  0.00048
LRR_PS     4/6     193   216 ..     1    24 []     4.8  2.9e+02
LRR_TYP    5/9     193   216 ..     1    24 []    18.0      1.3
LRR_TYP    6/9     217   237 ..     1    24 []    14.5      7.1
LRR_PS     5/6     217   239 ..     1    24 []     0.8  9.6e+02
LRR_TYP    7/9     241   264 ..     1    24 []     6.9       59
LRR_TYP    8/9     265   288 ..     1    24 []     2.1  2.3e+02
LRR_PS     6/6     289   311 ..     1    24 []     5.5  2.3e+02
LRR_TYP    9/9     289   312 ..     1    24 []    16.9      2.8

Alignments of top-scoring domains:
LRR_PS: domain 1 of 6, from 97 to 119: score 7.7, E = 1.2e+02
                   *->LtsLqvLdLsnNnLsGeIPsslgn<-*
                      +++L+ L+L +N++s ++ ++ ++   
   mKIAA0416    97    FSQLTWLHLDHNQIS-TVKEDAFQ    119  

LRR_TYP: domain 1 of 9, from 97 to 120: score 25.8, E = 0.006
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                       ++L+ L+L++Nq++++ ++aFqg   
   mKIAA0416    97    FSQLTWLHLDHNQISTVKEDAFQG    120  

LRR_TYP: domain 2 of 9, from 121 to 144: score 23.0, E = 0.041
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                      L +L+eL Ls+N++  LP+ +F     
   mKIAA0416   121    LYKLKELILSSNKIFYLPNTTFTQ    144  

LRR_PS: domain 2 of 6, from 145 to 167: score 17.0, E = 2.6
                   *->LtsLqvLdLsnNnLsGeIPsslgn<-*
                      L +Lq+LdLs+N+Ls ++ ++l+    
   mKIAA0416   145    LINLQNLDLSFNQLS-SLHPELFY    167  

LRR_TYP: domain 3 of 9, from 145 to 168: score 30.8, E = 0.00019
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                      L nL+ LdLs+NqL+sL+p++F g   
   mKIAA0416   145    LINLQNLDLSFNQLSSLHPELFYG    168  

LRR_PS: domain 3 of 6, from 169 to 191: score 13.8, E = 19
                   *->LtsLqvLdLsnNnLsGeIPsslgn<-*
                      L++Lq+L+L +N+L  +IP  l+    
   mKIAA0416   169    LRKLQTLHLRSNSLR-TIPVRLFW    191  

LRR_TYP: domain 4 of 9, from 169 to 192: score 29.4, E = 0.00048
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                      L++L++L+L +N L+++P ++F++   
   mKIAA0416   169    LRKLQTLHLRSNSLRTIPVRLFWD    192  

LRR_PS: domain 4 of 6, from 193 to 216: score 4.8, E = 2.9e+02
                   *->LtsLqvLdLsnNnLsGeIPsslgn<-*
                      ++sL++LdLs N+L       +     
   mKIAA0416   193    CRSLEFLDLSTNRLRSLARNGFAG    216  

LRR_TYP: domain 5 of 9, from 193 to 216: score 18.0, E = 1.3
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                       ++L+ LdLs N+L+sL ++ F+g   
   mKIAA0416   193    CRSLEFLDLSTNRLRSLARNGFAG    216  

LRR_TYP: domain 6 of 9, from 217 to 237: score 14.5, E = 7.1
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                      L +LreL+L++NqLt +    F++   
   mKIAA0416   217    LIKLRELHLEHNQLTKIN---FAH    237  

	[output cut off at A = 10 top alignments]
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