hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg05717/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA0416  ( 528 res)   mbg05717

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
LRR_1    Leucine Rich Repeat                             92.3    9.8e-24  10
LRRNT    Leucine rich repeat N-terminal domain           16.2       0.31   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
LRRNT      1/1      46    73 ..     1    34 []    16.2     0.31
LRR_1      1/10     75    98 ..     1    25 []     3.8  4.7e+02
LRR_1      2/10     99   122 ..     1    25 []    14.4      2.7
LRR_1      3/10    123   146 ..     1    25 []    11.5       20
LRR_1      4/10    147   170 ..     1    25 []    20.4    0.043
LRR_1      5/10    171   194 ..     1    25 []    14.7      2.2
LRR_1      6/10    195   218 ..     1    25 []    14.3      2.8
LRR_1      7/10    219   242 ..     1    25 []    15.7      1.1
LRR_1      8/10    243   258 ..     1    25 []     4.4  3.7e+02
LRR_1      9/10    267   290 ..     1    25 []    12.9      7.7
LRR_1     10/10    291   314 ..     1    25 []     9.7       49

Alignments of top-scoring domains:
LRRNT: domain 1 of 1, from 46 to 73: score 16.2, E = 0.31
                   *->aCpapCtCserytdglvVdCsgrgLtvavPrdlP<-*
                      aCp+ C+C+     +l ++C+++g   +vP       
   mKIAA0416    46    ACPPKCRCE-----KLLFYCDSQGFH-SVPNATD    73   

LRR_1: domain 1 of 10, from 75 to 98: score 3.8, E = 4.7e+02
                   *->nLeeLdLsgCNpslsgslpps.l.glp<-*
                          L+L++ N +++  l+ + + +++   
   mKIAA0416    75    GSLGLSLRH-N-HIT-ALERDqFaSFS    98   

LRR_1: domain 2 of 10, from 99 to 122: score 14.4, E = 2.7
                   *->nLeeLdLsgCNpslsgslpps.l.glp<-*
                      +L++L+L++ N ++s ++ +++++gl    
   mKIAA0416    99    QLTWLHLDH-N-QIS-TVKEDaFqGLY    122  

LRR_1: domain 3 of 10, from 123 to 146: score 11.5, E = 20
                   *->nLeeLdLsgCNpslsgslpps.l.glp<-*
                      +L+eL Ls+ N ++   lp+ ++  l    
   mKIAA0416   123    KLKELILSS-N-KIF-YLPNTtFtQLI    146  

LRR_1: domain 4 of 10, from 147 to 170: score 20.4, E = 0.043
                   *->nLeeLdLsgCNpslsgslpps.l.glp<-*
                      nL++LdLs  N +ls sl+p+ + gl+   
   mKIAA0416   147    NLQNLDLSF-N-QLS-SLHPElFyGLR    170  

LRR_1: domain 5 of 10, from 171 to 194: score 14.7, E = 2.2
                   *->nLeeLdLsgCNpslsgslpps.l.glp<-*
                      +L++L+L++ N sl +++p   + +++   
   mKIAA0416   171    KLQTLHLRS-N-SL-RTIPVRlFwDCR    194  

LRR_1: domain 6 of 10, from 195 to 218: score 14.3, E = 2.8
                   *->nLeeLdLsgCNpslsgslpps.l.glp<-*
                      +Le LdLs  N +l +sl+ +++ gl    
   mKIAA0416   195    SLEFLDLST-N-RL-RSLARNgFaGLI    218  

LRR_1: domain 7 of 10, from 219 to 242: score 15.7, E = 1.1
                   *->nLeeLdLsgCNpslsgslpps.l.glp<-*
                      +L+eL+L++ N +l+  +   ++  l+   
   mKIAA0416   219    KLRELHLEH-N-QLT-KINFAhFlRLS    242  

LRR_1: domain 8 of 10, from 243 to 258: score 4.4, E = 3.7e+02
                   *->nLeeLdLsgCNpslsgslppslglp<-*
                      +L +L L+  N ++s       +l+   
   mKIAA0416   243    SLHTLFLQW-N-KIS-------NLT    258  

LRR_1: domain 9 of 10, from 267 to 290: score 12.9, E = 7.7
                   *->nLeeLdLsgCNpslsgslpps.l.glp<-*
                      +Le+LdL g N ++ + +    ++ +p   
   mKIAA0416   267    TLEKLDLTG-N-EI-KAIDLTvFeTMP    290  

LRR_1: domain 10 of 10, from 291 to 314: score 9.7, E = 49
                   *->nLeeLdLsgCNpslsgslpps.l.glp<-*
                      nL++L +++ N +l+ sl +  l++l+   
   mKIAA0416   291    NLKILLMDN-N-KLN-SLDSKiLnSLK    314  

//