hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg10164/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0414  ( 491 res)   mbg10164

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
BTB      Broad-Complex, Tramtrack and Bric a brac        98.3    8.8e-25   1
ZnF_C2H2 zinc finger                                     30.8    0.00019   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
BTB        1/1      57   151 ..     1   114 []    98.3  8.8e-25
ZnF_C2H2   1/3     397   418 ..     1    23 []    11.1       18
ZnF_C2H2   2/3     424   446 ..     1    23 []    25.1     0.01
ZnF_C2H2   3/3     452   472 ..     1    23 []     9.1       29

Alignments of top-scoring domains:
BTB: domain 1 of 1, from 57 to 151: score 98.3, E = 8.8e-25
                   *->cDvtlvvggdlggdnaegkkfhasqHkavLaacrrdSpyFkalfes.
                      cDv +vv+g         ++f+a  HkavLaa+   SpyF +  + +
   mKIAA0414    57    CDVSIVVQG---------HIFQA--HKAVLAAS---SPYFCDQVLLk 89   

                   ....ieldDeallievspeaFralLnflYt.kldlpeedvenveelLelA
                   ++++i l+D     +++p +F+ +L f Yt++l +p     ++ ++L +A
   mKIAA0414    90 nsrrIVLPD-----VMNPRVFENILLFSYTgRLVMPAP---EIVSYLTAA 131  

                   dfldSYGqip.lvelCeefllknl<-*
                   +fl    q+ ++v++C+e l+ n    
   mKIAA0414   132 SFL----QMWhVVDKCTEVLEGNP    151  

ZnF_C2H2: domain 1 of 3, from 397 to 418: score 11.1, E = 18
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y C + Cgksf++k++  rHm +H   
   mKIAA0414   397    YPC-Q-CGKSFTHKsQRDRHMSMH    418  

ZnF_C2H2: domain 2 of 3, from 424 to 446: score 25.1, E = 0.01
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y C++ Cgk+f+ k++L+ Hm++H   
   mKIAA0414   424    YGCSV-CGKKFKMKhHLVGHMKIH    446  

ZnF_C2H2: domain 3 of 3, from 452 to 472: score 9.1, E = 29
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C+i C k+f +++++ rH+      
   mKIAA0414   452    YECNI-CAKRFMWRdSFHRHVT--    472  

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