hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbg/mbg10164/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0414 ( 491 res) mbg10164 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- BTB BTB/POZ domain 124.2 2.4e-33 1 zf-C2H2 Zinc finger, C2H2 type 54.8 1.9e-12 3 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- BTB 1/1 47 151 .. 1 135 [] 124.2 2.4e-33 zf-C2H2 1/3 397 418 .. 1 24 [] 21.4 0.021 zf-C2H2 2/3 424 446 .. 1 24 [] 27.5 0.00032 zf-C2H2 3/3 452 474 .. 1 24 [] 20.9 0.03 Alignments of top-scoring domains: BTB: domain 1 of 1, from 47 to 151: score 124.2, E = 2.4e-33 *->lnelreqgelcDVtLvvgdgsgrydvgkkfkAHKavLaacSpYFkal ln++r+qg+lcDV +vv+ g+ f AHKavLaa+SpYF + mKIAA0414 47 LNQQRQQGQLCDVSIVVQ--------GHIFQAHKAVLAASSPYFCDQ 85 FtgqfkesiteeessvsseieledvspedfealLefiYtgelsitqdqks + + + + ++ + ++p +fe++L f Ytg+l ++ mKIAA0414 86 VLLK-------NSRR---IVLPDVMNPRVFENILLFSYTGRLVMP----- 120 PssckseenvedlLalAadllqipslvdkCeefliksl<-* ++++L +A ++lq++++vdkC+e l + mKIAA0414 121 ------APEIVSYLTAA-SFLQMWHVVDKCTEVLEGNP 151 zf-C2H2: domain 1 of 3, from 397 to 418: score 21.4, E = 0.021 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ CgksF++ks+ rH+ +H mKIAA0414 397 YPCQ--CGKSFTHKSQRDRHMSMH 418 zf-C2H2: domain 2 of 3, from 424 to 446: score 27.5, E = 0.00032 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +Cgk+F+ k++L H+++H mKIAA0414 424 YGCS-VCGKKFKMKHHLVGHMKIH 446 zf-C2H2: domain 3 of 3, from 452 to 474: score 20.9, E = 0.03 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +C k+F +++++rH ++ mKIAA0414 452 YECN-ICAKRFMWRDSFHRHVTSC 474 //