hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/meh/meh00513/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0413 ( 1251 res) meh00513 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- WD40 WD40 repeats 386.3 1.8e-111 13 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- WD40 1/13 606 645 .. 1 46 [] 33.8 2.3e-05 WD40 2/13 648 687 .. 1 46 [] 54.1 1.8e-11 WD40 3/13 690 731 .. 1 46 [] 39.3 5.3e-07 WD40 4/13 734 773 .. 1 46 [] 57.5 1.7e-12 WD40 5/13 782 827 .. 1 46 [] 8.5 22 WD40 6/13 830 870 .. 1 46 [] 14.5 2.5 WD40 7/13 873 912 .. 1 46 [] 42.5 5.8e-08 WD40 8/13 954 991 .. 1 46 [] 12.9 4.4 WD40 9/13 994 1033 .. 1 46 [] 34.1 2e-05 WD40 10/13 1035 1073 .. 1 46 [] 23.2 0.036 WD40 11/13 1076 1115 .. 1 46 [] 36.0 5.2e-06 WD40 12/13 1118 1157 .. 1 46 [] 41.1 1.4e-07 WD40 13/13 1170 1206 .. 1 46 [] 25.4 0.0079 Alignments of top-scoring domains: WD40: domain 1 of 13, from 606 to 645: score 33.8, E = 2.3e-05 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW ++ + + Ht+ +V++ +fs+dg +++as++ D+t+ ++ mKIAA0413 606 KnLSRLVVRPHTD--AVYHACFSQDG------QRIASCGaDKTLQVF 644 d<-* + mKIAA0413 645 K 645 WD40: domain 2 of 13, from 648 to 687: score 54.1, E = 1.8e-11 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW t++ l +k+H++ +V+++afs+d+ +++a++s D+++++W mKIAA0413 648 TgEKLLDIKAHED--EVLCCAFSSDD------SYIATCSaDKKVKIW 686 d<-* d mKIAA0413 687 D 687 WD40: domain 3 of 13, from 690 to 731: score 39.3, E = 5.3e-07 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW t+kl++t++ H+ V+++ f +++ lla+gs+D ++lW mKIAA0413 690 TgKLVHTYDEHSE--QVNCCHFTNKSNH----LLLATGSnDFFLKLW 730 d<-* d mKIAA0413 731 D 731 WD40: domain 4 of 13, from 734 to 773: score 57.5, E = 1.7e-12 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW ++++ t+ gHt+ +V++++fspd+ +llas+s Dgt+rlW mKIAA0413 734 QkECRNTMFGHTN--SVNHCRFSPDD------ELLASCSaDGTLRLW 772 d<-* d mKIAA0413 773 D 773 WD40: domain 5 of 13, from 782 to 827: score 8.5, E = 22 *->t.kllrtlkgHtge.....spVtsvafspdggssdspnllasgs.Dg + ++ r + ++++++ + V ++++s dg + ++++ +++ mKIAA0413 782 SiNVKRFFLSSEDPpedveVIVKCCSWSADG------DKIIVAAkNK 822 tirlWd<-* + l+d mKIAA0413 823 -VLLFD 827 WD40: domain 6 of 13, from 830 to 870: score 14.5, E = 2.5 *->t.kllrtlk.gHtgespVtsvafspdggssdspnllasgs.Dgtirl t+ ll+++++gH + + ++fsp + +l + + + ++ l mKIAA0413 830 TsGLLAEIHtGHHS--TIQYCDFSPYD------HLAVIALsQYCVEL 868 Wd<-* W+ mKIAA0413 869 WN 870 WD40: domain 7 of 13, from 873 to 912: score 42.5, E = 5.8e-08 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW ++ ++ ++gH + +V++v fspdg + ++++s+D tir+W mKIAA0413 873 SrLKVADCRGHLS--WVHGVMFSPDG------SSFLTASdDQTIRVW 911 d<-* + mKIAA0413 912 E 912 WD40: domain 8 of 13, from 954 to 991: score 12.9, E = 4.4 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW ++ ++ l+ ++ V++++ sp+ +++a g++Dg i++ mKIAA0413 954 KtGQIDYLP--EA--QVSCCCLSPHL------EYVAFGDeDGAIKII 990 d<-* + mKIAA0413 991 E 991 WD40: domain 9 of 13, from 994 to 1033: score 34.1, E = 2e-05 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW ++++ ++ gH++ +V++++f dg + l+s+s+D+ i +W mKIAA0413 994 NnRVFSSGVGHKK--AVRHIQFTADG------KTLISSSeDSVIQVW 1032 d<-* + mKIAA0413 1033 N 1033 WD40: domain 10 of 13, from 1035 to 1073: score 23.2, E = 0.036 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW ++ l++H+ V + + +d ++l+s s Dgt+++W mKIAA0413 1035 QtGDYVFLQAHQE--TVKDFRLLQD-------SRLLSWSfDGTVKVW 1072 d<-* + mKIAA0413 1073 N 1073 [output cut off at A = 10 top alignments] //