hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/meh/meh00513/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0413 ( 1251 res) meh00513 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- NB-ARC NB-ARC domain 397.9 1e-115 1 WD40 WD domain, G-beta repeat 337.9 1.2e-97 13 CARD Caspase recruitment domain 96.7 4.6e-25 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- CARD 1/1 8 92 .. 1 89 [] 96.7 4.6e-25 NB-ARC 1/1 111 416 .. 1 371 [] 397.9 1e-115 WD40 1/13 608 645 .. 1 38 [] 31.8 1.6e-05 WD40 2/13 650 687 .. 1 38 [] 51.4 2e-11 WD40 3/13 692 731 .. 1 38 [] 33.0 7.1e-06 WD40 4/13 736 773 .. 1 38 [] 55.8 9.6e-13 WD40 5/13 791 827 .. 1 38 [] 5.3 46 WD40 6/13 833 870 .. 1 38 [] 6.3 34 WD40 7/13 875 912 .. 1 38 [] 38.2 1.9e-07 WD40 8/13 954 991 .. 1 38 [] 16.2 0.81 WD40 9/13 996 1033 .. 1 38 [] 31.3 2.3e-05 WD40 10/13 1037 1073 .. 1 38 [] 20.8 0.032 WD40 11/13 1078 1115 .. 1 38 [] 32.5 9.6e-06 WD40 12/13 1120 1157 .. 1 38 [] 37.8 2.5e-07 WD40 13/13 1171 1206 .. 1 38 [] 15.3 1.5 Alignments of top-scoring domains: CARD: domain 1 of 1, from 8 to 92: score 96.7, E = 4.6e-25 *->rellrknRvaLvrrlgketldglLDyLleknVLteeeyEeIkaantt r++l ++R+aL ++++ ++++D++++++VL+ e+E++k+ ++t mKIAA0413 8 RNCLLQHREALEKDIK---TSYIMDHMISNGVLSVIEEEKVKS-QAT 50 rrdkareLldlvqkkGpeafqiFleaLretgqphLadllels<-* ++a +L++++++k++ a+ F++aL ++g+++La ll+++ mKIAA0413 51 QYQRAAALIKMILNKDNCAYISFYNALLHEGYKDLAALLQSG 92 NB-ARC: domain 1 of 1, from 111 to 416: score 397.9, E = 1e-115 *->dvktvlssevevidtsevFVGredmieaviekLlemsadenlgvvgi v+tvl++ ++v++++++FV+r++ + a+++kL + + +++g+v+i mKIAA0413 111 FVRTVLCE-GGVPQRPVIFVTRKKLVHAIQQKLWKLN--GEPGWVTI 154 vGMGGvGKTTLAkqiynddslvgghFPDvvaWvvVSktyteKDsvfrlqk +GM+G+GK++LA+++++d+sl++g+F ++v+Wv+++k++++ + l+k mKIAA0413 155 YGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKS----GLLMK 200 dQlilqeLglddeswddshsiTDFiNRVLSRSEDDLLnfpSserveknes Q+++ +L+++ es+ s+r ++n++ mKIAA0413 201 LQNLCMRLDQE-ESF--------------------------SQRLPLNIE 223 evlarklkelLlrKHPRfLlVLDDVWekeldWdkigvpfpdgengsrvil e ++++l+ l+lrKHPR+Ll+LDDVW+ + ++ ++++n+++++l mKIAA0413 224 E-AKDRLRVLMLRKHPRSLLILDDVWDPW-VL-------KAFDNQCQILL 264 TTRsesVagrmgakeskpheve.lLekeesWeLFsnkGmPmPVfekedpl TTR++sV+++++++ + +++ve+ L+ e+++e++s + V++k+ + mKIAA0413 265 TTRDKSVTDSVMGP-KHVVPVEsGLGREKGLEILSLF-----VNMKK-E- 306 sehpelEevakeivekCkGLPLalkvlGglLasKsktvYeeWekvleqln +l++ a++i+++CkG+PL+++++G+lL ++ ++ ++W ++l+ql+ mKIAA0413 307 ----DLPAEAHSIIKECKGSPLVVSLIGALL--RD-FP-NRWAYYLRQLQ 348 nelae.srgsssnlnevls.iLklSYdnLpsdhLKrCFlylaDEDRSALl n++++++r+sss+++e+l++++++S+++L++ ++K+++++l+ + mKIAA0413 349 NKQFKrIRKSSSYDYEALDeAMSISVEMLRE-DIKDYYTDLS-------I 390 FpedyeirkeqlvklWiaEgfveasdi<-* +++d+++++++l+ lW+ E++ e++di mKIAA0413 391 LQKDVKVPTKVLCVLWDLETE-EVEDI 416 WD40: domain 1 of 13, from 608 to 645: score 31.8, E = 1.6e-05 *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-* v + Ht++V+ +fs+d g+++as+++D+t+ +++ mKIAA0413 608 LSRLVVrPHTDAVYHACFSQD-GQRIASCGADKTLQVFK 645 WD40: domain 2 of 13, from 650 to 687: score 51.4, E = 2e-11 *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-* e l +++H++ V c+afs d +++a++S+D+++kiWd mKIAA0413 650 EKLLDIkAHEDEVLCCAFSSD-DSYIATCSADKKVKIWD 687 WD40: domain 3 of 13, from 692 to 731: score 33.0, E = 7.1e-06 *->eclavl.gHtspVtcvafspd.sgpllasgSrDgtikiWd<-* +++++++ H+ V+c+ f ++ lla+gS D +k+Wd mKIAA0413 692 KLVHTYdEHSEQVNCCHFTNKsNHLLLATGSNDFFLKLWD 731 WD40: domain 4 of 13, from 736 to 773: score 55.8, E = 9.6e-13 *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-* ec + gHt++V+ ++fspd +llas+S+Dgt+++Wd mKIAA0413 736 ECRNTMfGHTNSVNHCRFSPD-DELLASCSADGTLRLWD 773 WD40: domain 5 of 13, from 791 to 827: score 5.3, E = 46 *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-* ++ + V c+++s d g ++ + +++ ++d mKIAA0413 791 SSEDPPeDVEVIVKCCSWSAD-GDKIIVAAK-NKVLLFD 827 WD40: domain 6 of 13, from 833 to 870: score 6.3, E = 34 *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-* + +++gH s++ ++fsp +l + + + ++ +W+ mKIAA0413 833 LLAEIHtGHHSTIQYCDFSPY-DHLAVIALSQYCVELWN 870 WD40: domain 7 of 13, from 875 to 912: score 38.2, E = 1.9e-07 *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-* +a +gH s+V v fspd g+ ++++S+D ti++W+ mKIAA0413 875 LKVADCrGHLSWVHGVMFSPD-GSSFLTASDDQTIRVWE 912 WD40: domain 8 of 13, from 954 to 991: score 16.2, E = 0.81 *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-* + ++ + ++ V+c++ sp+ +++a g +Dg iki + mKIAA0413 954 KTGQIDyLPEAQVSCCCLSPH-LEYVAFGDEDGAIKIIE 991 WD40: domain 9 of 13, from 996 to 1033: score 31.3, E = 2.3e-05 *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-* + ++ gH+++V+ + f d g++l+s+S+D i +W+ mKIAA0413 996 RVFSSGvGHKKAVRHIQFTAD-GKTLISSSEDSVIQVWN 1033 WD40: domain 10 of 13, from 1037 to 1073: score 20.8, E = 0.032 *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-* l++H+ +V + + +d ++l+s S Dgt+k+W+ mKIAA0413 1037 GDYVFLqAHQETVKDFRLLQD--SRLLSWSFDGTVKVWN 1073 WD40: domain 11 of 13, from 1078 to 1115: score 32.5, E = 9.6e-06 *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-* + ++ H+++V ++a+s d + + s S+D+t kiW+ mKIAA0413 1078 RIERDFtCHQGTVLSCAISSD-ATKFSSTSADKTAKIWS 1115 WD40: domain 12 of 13, from 1120 to 1157: score 37.8, E = 2.5e-07 *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-* +l++l+gH++ V+c afs d g lla+g ++g i+iW+ mKIAA0413 1120 SPLHELkGHNGCVRCSAFSLD-GILLATGDDNGEIRIWN 1157 WD40: domain 13 of 13, from 1171 to 1206: score 15.3, E = 1.5 *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-* + H ++Vt+v+fspd +++l+s++ +k W+ mKIAA0413 1171 SVEEGTaTHGGWVTDVCFSPD-SKTLVSAGG--YLKWWN 1206 //